Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq121033 176 1e-38 seq24600 167 5e-36 seq311453 141 2e-28 seq99924 100 6e-16 seq15708 96.9 8e-15 seq236318 86.0 1e-11 >seq121033 Length=27437 Score = 176 bits (194), Expect = 1e-38 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| ||||||||||| || || || ||||| || || || || || || || ||||||| Sbjct 12635 GAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAATATTCTTCA 12694 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 12695 TCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTTCACTATGT 12754 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||| | ||| | || || |||||| | ||||||||||||| Sbjct 12755 TTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACAAG 12799 >seq24600 Length=2898 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | |||||||| || || |||||| Sbjct 8 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 67 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||||||||| |||||||| || |||||||| ||||| || || || || Sbjct 68 GCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTC 127 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || |||||||| ||||| ||||| ||||| | || Sbjct 128 ACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAGGTC 187 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 188 TTCACAAAGATCTGCAT 204 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || |||||| Sbjct 436 ATCCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 495 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | ||| || || ||||| || | |||||| ||||||||| Sbjct 496 GAGAGGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGA 555 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | ||| || || || || Sbjct 556 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCC 615 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || ||||| ||||| ||||| | || || ||||| |||||||| || Sbjct 616 ACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 |||||| ||||||||||| || ||||| || ||||| || || || || ||||| || | Sbjct 312 CCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAAT 371 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 ||| || || || || ||||| || ||||| ||||| ||||| | || || ||||| || Sbjct 372 GGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGAT 431 Query 104554 CTGCAT 104559 |||||| Sbjct 432 CTGCAT 437 >seq311453 Length=2514 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||| || || || || ||||| Sbjct 389 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCT 448 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||| || |||||||| || |||||||| || || ||| Sbjct 449 GAGAGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 508 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || ||||| || | ||| || || || || Sbjct 509 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 568 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||| || || || || || || | || || ||||| ||||||||||| Sbjct 569 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 >seq99924 Length=25621 Score = 100 bits (110), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||||| || || |||||||| || || | || ||| | || || ||||||||||| Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || ||||||||||| |||| ||| || ||||| || ||||| || || || || ||||| Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987 Query 104489 TCTACGGT 104496 || | ||| Sbjct 22986 TCAATGGT 22979 >seq15708 Length=5494 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| || ||||| | ||||| || || ||||| ||| | ||||||||| Sbjct 2679 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTCCAAATATCAATAGAAAAT 2738 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| ||||| || Sbjct 2739 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACAT 2779 >seq236318 Length=20466 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 269494 TGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGA 269553 ||| ||||| ||| |||||||||||||| || | ||||| ||| |||||||||| || Sbjct 7612 TGAGAATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAGACTAATTTCTTTGA 7671 Query 269554 GAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTT 269613 || || ||| | | ||||| | |||||||| ||||| | | | ||| || || Sbjct 7672 AAAACGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCAAGTCCTGCAGATAACTCATT 7731 Query 269614 CACTACAGATGCAGAATTCTAA 269635 |||| |||||||| |||||| Sbjct 7732 CACTTTGGATGCAGATTTCTAA 7753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1138358554055360