Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq399860 93.3 2e-14 >seq399860 Length=4320 Score = 93.3 bits (102), Expect = 2e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 3619 TGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTT 3678 |||| || ||||||||||||| ||||| ||||| || ||||||||| |||||||| | Sbjct 2136 TGAACTGCTATATTTTGCTGATGTATGTGCTGGCCCTGGTGGTTTCTCAGAATATATCCT 2195 Query 3679 ATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATTT 3738 ||||| ||||| ||| || ||||||| ||| ||||| ||| | | ||| ||||| Sbjct 2196 CTGGAGGAAGAAGTGGCATGCAAAAGGTTTTGGGATGACCTTAAAAGGACCAAACGATTT 2255 Query 3739 TCAACTGAACAGATTT 3754 || || | |||||| Sbjct 2256 CAAATTGGA-AGATTT 2270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 273574350291760