Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq356429 156 6e-33 seq307280 118 1e-21 seq39753 96.9 5e-15 >seq356429 Length=1100 Score = 156 bits (172), Expect = 6e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | | ||||||| ||| |||||| ||||| || || | |||| Sbjct 758 GGAACGCCACGTAGGGACACCGTTTCACGTTGAGGCAGACCAGTTTTTGCAAGCTTGCCG 817 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || || || | || || || |||||||| |||||||| | |||| Sbjct 818 TGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATTCGGGGG 877 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| ||| || || || | ||| || |||||||||| ||||| |||| Sbjct 878 AGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGATCATGC 937 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||| |||||| || ||| |||||||| | |||| | | ||||||| Sbjct 938 TTTCTCCAAAGATGCTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCA 997 Query 8919 CAGCCTCGATGTCTCCGTA 8937 ||| |||||||||||||| Sbjct 998 GAGCGTCGATGTCTCCGTA 1016 >seq307280 Length=12320 Score = 118 bits (130), Expect = 1e-21 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || || || || || |||||||| | || ||||||||||||| Sbjct 7650 CAAAGCCAACTGCACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGT 7709 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||| ||||| | ||| || |||||||| || || | ||| | ||||| |||| Sbjct 7710 TTCCCAGGAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGA 7769 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 ||| ||||| ||||||| || |||||| | | || || |||| ||| || || Sbjct 7770 CGGCTCCAGGACGTGGCTTTT-CAACAAGAAGAGCAGGATATAATTCCATAGCATCAATA 7828 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | ||||| ||||| ||||| ||||| ||||| Sbjct 7829 TCTCCATAGAGTTCTTGAAGTTCTGCAGCCATTTCTTTTTCACCTGT 7875 Score = 113 bits (124), Expect = 6e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| | | |||| ||| ||||||||| ||||||| ||| |||| || || || Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| | || || |||| ||||| Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || || | ||| ||||||||||| | Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 ||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||||||||||||||| || ||||| ||||| | || ||| ||| ||| | || Sbjct 12096 TCTTACCCCATGTCCAAGACCTTTTGTGAAACCTGGTCCTTTTTTAGTATCTGTCTTGAA 12155 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 12156 GTACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATC 12215 Query 10148 GGGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178 ||| |||| | |||| || |||| ||||| Sbjct 12216 AGGAATGAATTTTCTCCTTAGCAAGAATTTTT 12247 >seq39753 Length=874 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9447 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9506 ||||||||| || | ||||||||| || | | ||||||||| | || || || || Sbjct 346 ATCCGGCATTAGGGCATGCCAGTGGTAGAGCTGGTTAAACTCCAGAGCAATGCGGTTCTG 405 Query 9507 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCC 9566 |||||||||| | |||||||| || ||||| | ||||| || || | ||||||||| Sbjct 406 GTACTGGAACTGGGCCCCAAAGAGGAGCTCGGGTTCAAACATCAGCTTCAGGTGGTAGCC 465 Query 9567 GCTGAGCTGCTGAACATA 9584 |||||| ||||| || || Sbjct 466 GCTGAGATGCTGGACGTA 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700696309484800