Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq356429 156 6e-33
seq307280 118 1e-21
seq39753 96.9 5e-15
>seq356429
Length=1100
Score = 156 bits (172), Expect = 6e-33
Identities = 190/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
||||||| | | ||||||| ||| |||||| ||||| || || | ||||
Sbjct 758 GGAACGCCACGTAGGGACACCGTTTCACGTTGAGGCAGACCAGTTTTTGCAAGCTTGCCG 817
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||||||| | || || || | || || || |||||||| |||||||| | ||||
Sbjct 818 TGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATTCGGGGG 877
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| ||| || || || | ||| || |||||||||| ||||| ||||
Sbjct 878 AGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGATCATGC 937
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || |||||| |||||| || ||| |||||||| | |||| | | |||||||
Sbjct 938 TTTCTCCAAAGATGCTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCA 997
Query 8919 CAGCCTCGATGTCTCCGTA 8937
||| ||||||||||||||
Sbjct 998 GAGCGTCGATGTCTCCGTA 1016
>seq307280
Length=12320
Score = 118 bits (130), Expect = 1e-21
Identities = 164/227 (72%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810
|||| || || | || || || || || || |||||||| | || |||||||||||||
Sbjct 7650 CAAAGCCAACTGCACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGT 7709
Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870
| ||| ||| ||||| | ||| || |||||||| || || | ||| | ||||| ||||
Sbjct 7710 TTCCCAGGAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGA 7769
Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929
||| ||||| ||||||| || |||||| | | || || |||| ||| || ||
Sbjct 7770 CGGCTCCAGGACGTGGCTTTT-CAACAAGAAGAGCAGGATATAATTCCATAGCATCAATA 7828
Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
||||| || || | ||||| ||||| ||||| ||||| |||||
Sbjct 7829 TCTCCATAGAGTTCTTGAAGTTCTGCAGCCATTTCTTTTTCACCTGT 7875
Score = 113 bits (124), Expect = 6e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
|||||||| | | |||| ||| ||||||||| ||||||| ||| |||| || || ||
Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| || ||||||| |||||| | || || |||||||| | || || |||| |||||
Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || |||| | || | || || || | ||| ||||||||||| |
Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863
||| ||||| || | || ||||||||||| || ||||| |||||
Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137
Score = 86.0 bits (94), Expect = 9e-12
Identities = 111/152 (73%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
||||||||||||||| || ||||| ||||| | || ||| ||| ||| | ||
Sbjct 12096 TCTTACCCCATGTCCAAGACCTTTTGTGAAACCTGGTCCTTTTTTAGTATCTGTCTTGAA 12155
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||||||| |||||||| ||| |||| |||| ||||| | || ||||| || |||||
Sbjct 12156 GTACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATC 12215
Query 10148 GGGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178
||| |||| | |||| || |||| |||||
Sbjct 12216 AGGAATGAATTTTCTCCTTAGCAAGAATTTTT 12247
>seq39753
Length=874
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 9447 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9506
||||||||| || | ||||||||| || | | ||||||||| | || || || ||
Sbjct 346 ATCCGGCATTAGGGCATGCCAGTGGTAGAGCTGGTTAAACTCCAGAGCAATGCGGTTCTG 405
Query 9507 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCC 9566
|||||||||| | |||||||| || ||||| | ||||| || || | |||||||||
Sbjct 406 GTACTGGAACTGGGCCCCAAAGAGGAGCTCGGGTTCAAACATCAGCTTCAGGTGGTAGCC 465
Query 9567 GCTGAGCTGCTGAACATA 9584
|||||| ||||| || ||
Sbjct 466 GCTGAGATGCTGGACGTA 483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 700696309484800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |