Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq311453 116 3e-21 seq24600 96.9 3e-15 >seq311453 Length=2514 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || |||| || | |||| ||| | ||| || ||||| || | ||| | Sbjct 156 TTTGCATGCCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 215 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | || ||||||||||| || ||||||| | || ||||| | Sbjct 216 AGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGT 275 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||||||||| | || || |||||||| | | |||||| | Sbjct 276 CGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGG 335 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | ||||||||||||||||| | || || |||||||||||||||| Sbjct 336 GTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATGC 392 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| || ||||||| | || ||||| || |||||||| ||||| || Sbjct 7 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 66 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | | |||||| | | || || |||| || || Sbjct 67 GTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTAT 126 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||||| || | || || |||||||| ||||||| Sbjct 127 GGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCATGC 164 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||| || || | |||| | ||| |||| || || || Sbjct 422 GTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAATTGCTTCCCA 481 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || ||||| || ||||| ||||| | || || |||||| Sbjct 482 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 541 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || ||| |||||| | | || || || | ||||||||||| || || | || Sbjct 542 ACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 601 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 602 TTCACAAAGATCTGCAT 618 >seq24600 Length=2898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || ||| ||||||| || || |||||||| |||||||| ||||| || Sbjct 510 ATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTT 569 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | ||||| ||||| || | | |||||| | ||| || || || | || | Sbjct 570 GTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCCAGGGTAA 628 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | || ||||||||||||||||| Sbjct 629 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| ||||| ||||||| | || || || || |||||||| ||||||||| Sbjct 50 TCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 109 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| ||||| || | | |||||| | ||| || || || | || || Sbjct 110 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCTAGGGTAAT 168 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | || ||||||||||||||||| Sbjct 169 GGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443338030531200