Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 116 3e-21
seq24600 96.9 3e-15
>seq311453
Length=2514
Score = 116 bits (128), Expect = 3e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || || |||| || | |||| ||| | ||| || ||||| || | ||| |
Sbjct 156 TTTGCATGCCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 215
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || | ||| | || ||||||||||| || ||||||| | || ||||| |
Sbjct 216 AGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGT 275
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| |||||||| ||||||||||| | || || |||||||| | | |||||| |
Sbjct 276 CGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGG 335
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || | ||||||||||||||||| | || || ||||||||||||||||
Sbjct 336 GTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATGC 392
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||||||||| || ||||||| | || ||||| || |||||||| ||||| ||
Sbjct 7 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 66
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||||||| | | |||||| | | || || |||| || ||
Sbjct 67 GTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTAT 126
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||||||| || | || || |||||||| |||||||
Sbjct 127 GGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCATGC 164
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| ||||||||||| | ||| || || | |||| | ||| |||| || || ||
Sbjct 422 GTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAATTGCTTCCCA 481
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| | || ||||| || ||||| || ||||| ||||| | || || ||||||
Sbjct 482 GCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 541
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| |||||| | | || || || | ||||||||||| || || | ||
Sbjct 542 ACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTC 601
Query 94991 TTCACAAAGATCTGCAT 95007
|||||||||||||||||
Sbjct 602 TTCACAAAGATCTGCAT 618
>seq24600
Length=2898
Score = 96.9 bits (106), Expect = 3e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| || || ||| ||||||| || || |||||||| |||||||| ||||| ||
Sbjct 510 ATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTT 569
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970
||| | ||||| ||||| || | | |||||| | ||| || || || | || |
Sbjct 570 GTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCCAGGGTAA 628
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || ||||| | || |||||||||||||||||
Sbjct 629 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||||||| ||||| ||||||| | || || || || |||||||| |||||||||
Sbjct 50 TCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 109
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971
|| | ||||| ||||| || | | |||||| | ||| || || || | || ||
Sbjct 110 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCACCTCTAGGGTAAT 168
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || ||||| | || |||||||||||||||||
Sbjct 169 GGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443338030531200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |