Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq241714 178 2e-40 seq175877 163 4e-36 seq284294 147 3e-31 seq744941 125 1e-24 seq73813 114 2e-21 >seq241714 Length=7636 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||| | ||||| | | || || ||||| |||||||| || |||||||| ||||| Sbjct 2786 CGCTAAGAGGCATCGGAAAGTGCTCCGCGATAATATCCAAGGCATTACCAAGCCTGCTAT 2727 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| ||||||||||| |||||| | ||||| ||| | ||||| || | Sbjct 2726 TCGTCGTTTGGCTCGCCGTGGTGGAGTAAAGCGTATTTCTGGCTTGATTTATGAGGAAAC 2667 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || | | ||||| | |||||| | ||| ||||| Sbjct 2666 TCGCGGCGTACTGAAGGTTTTTCTGGAAAATGTTATTCGTGATGCCGTGACCTACACCGA 2607 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || |||||||| || | ||||| |||| ||||| |||||||| ||||| Sbjct 2606 GCATGCAAAGCGAAAGACTGTGACTGCGATGGACGTCGTTTATGCCTTGAAACGCCAAGG 2547 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||| || ||| | ||| Sbjct 2546 TCGTACCCTGTATGGCTTCGGAGGCTAA 2519 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||| | || || | | ||| || |||||||||||||| |||||||| || ||||| Sbjct 6239 CGCTAAGAGGCACCGGAAAGTTCTCCGCGATAACATCCAAGGCATCACCAAACCTGCTAT 6180 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| ||||| || || |||||| | || || ||| | || ||||||| Sbjct 6179 ACGCCGTCTGGCTCGCCGTGGAGGTGTGAAGCGTATTTCGGGTTTGATTTACGAAGAGAC 6120 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| |||| | ||| ||||| | |||||| | ||| ||||| Sbjct 6119 TCGCGGCGTACTGAAGGTCTTTTTGGAGAATGTTATTCGGGATGCTGTGACCTACACCGA 6060 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | |||||| | || ||||| |||||||| || || Sbjct 6059 GCACGCGAAGAGAAAGACCGTAACTGCTATGGATGTGGTTTATGCTTTGAAACGCCAGGG 6000 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | || |||||||| Sbjct 5999 CCGTACTCTGTACGGTTTTGG 5979 >seq175877 Length=1790 Score = 163 bits (180), Expect = 4e-36 Identities = 192/259 (74%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| ||||| |||||||| ||| ||||||| || || Sbjct 1282 CTCCGTGATAACATCCAAGGCATCACGAAGCCGGCTATCCGGCGTTTGGCTCGCCGCGGA 1223 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| ||| |||| ||||||| |||| || |||||| |||| Sbjct 1222 GGCGTGAAGCGAATTTCTGGCTTGATCTACGAAGAGACGCGTGGGGTGTTGAAGGTCTTT 1163 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||| | || ||||||||||| || || ||||| || Sbjct 1162 CTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGAGCACGCCAAGCGGAAGACCGTG 1103 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || ||||||| ||||| |||| | || || ||||| Sbjct 1102 ACGGCCATGGACGTGGTGTACGCGCTGAAACGCCAAGGTCGTACTTTGTACGGCTTTGGG 1043 Query 16694 AGTTAATCTTCTAATCAAA 16712 | ||| ||||| |||| Sbjct 1042 GGCTAA--TTCTAGACAAA 1026 >seq284294 Length=3719 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| ||||| || || ||||||||||||| Sbjct 1632 CTCCGTGACAACATCCAGGGCATCACGAAGCCCGCTATTCGCCGCTTGGCTCGTCGTGGG 1573 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || | |||||||||||| ||| | || ||||| |||| Sbjct 1572 GGAGTGAAGCGGATCTCCGGGCTCATCTATGAAGAGACTCGAGGCGTCTTGAAAGTCTTT 1513 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||||| ||||| | ||| || || || || || | ||||| || Sbjct 1512 TTGGAGAACGTTATCCGGGATGCGGTTACCTACACTGAACATGCCAAGAGGAAGACGGTG 1453 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| |||||||| ||||| || | | || |||||||| Sbjct 1452 ACTGCTATGGACGTCGTTTATGCTTTGAAACGCCAAGGTCGCACCCTGTACGGTTTTGGT 1393 Query 16694 AGTTAA 16699 ||||| Sbjct 1392 GGTTAA 1387 >seq744941 Length=370 Score = 125 bits (138), Expect = 1e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16478 ACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTG 16537 |||||||| || ||||| ||| |||||||||| || || || |||||| | || || || Sbjct 1 ACCAAGCCGGCGATCCGCCGTTTGGCTCGTCGCGGAGGCGTGAAGCGTATTTCGGGCCTG 60 Query 16538 GTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT 16597 |||| || |||| ||| | || ||||| | ||| | | | ||| || | |||||| Sbjct 61 ATCTACGAGGAGACTCGCGGCGTCCTGAAGGTTTTCTTGGAAAACGTGATTCGCGATGCT 120 Query 16598 TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCA 16657 || ||| ||||||||||| || | ||||| |||||| ||||||| | ||||| || Sbjct 121 GTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCACCGCCATGGACGTGGTCTACGCC 180 Query 16658 TTGAAACGTCAAGGCCG 16674 ||||| || || ||||| Sbjct 181 TTGAAGCGCCAGGGCCG 197 >seq73813 Length=1651 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || || ||||| || ||||| || |||||||| || || Sbjct 1014 CTCCGGGATAACATCCAGGGGATTACGAAGCCCGCCATCCGCCGGCTGGCTCGGCGCGGG 1073 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || | |||| || || | || | || ||||| |||| Sbjct 1074 GGCGTCAAGCGGATTTCGGGGCTCATCTACGAGGAAACGCGGGGCGTCCTGAAGGTCTTT 1133 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | || ||||||||||| || | || || ||| Sbjct 1134 CTGGAGAACGTGATCCGCGACGCGGTGACTTACACCGAGCACGCCAAGAGGAAAACGGTC 1193 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||| | ||||| || |||| || |||||||| Sbjct 1194 ACGGCCATGGATGTGGTCTACGCCCTGAAGCGCCAAGGCCG 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78267025756560