Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq236318 113 5e-20 seq240708 91.5 2e-13 >seq236318 Length=20466 Score = 113 bits (124), Expect = 5e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 |||| || |||| |||| ||||| || | ||||||||||| || | || ||||||| Sbjct 6260 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAG 6202 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAAC 21606 |||| || || | |||||||||||| ||||| | || |||||||| || || ||||| Sbjct 6201 ACCTCGTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 6142 Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||||||| |||| |||||||| Sbjct 6141 TGCAGCAAATGCTACTACACGTTCACC 6115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| |||||| | ||||||| | ||||| Sbjct 7754 TTTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCC 7695 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | |||||| || ||||| ||||| ||||||| || ||| | Sbjct 7694 TTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCT 7635 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 7634 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 7601 >seq240708 Length=9485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 153560 ATaaaaaaataaaaaCAATCACGGATATCTATATATTCAATTTAGCAATTTCTGATTTAA 153619 |||| ||| | |||| || || ||||| ||| |||| |||||||| |||||||||||| Sbjct 6720 ATAAGAAATTCAAAAGTATGACTGATATATATCTATTAAATTTAGCCATTTCTGATTTAT 6661 Query 153620 TATTTGTTATAGATTTCCCATTCATAATCTATAATGAGTTTGATCAATGGATATTTGGTG 153679 | || || | ||||||| || || ||| | ||| ||||| ||||||| | Sbjct 6660 TTTTCATTTTCTCAATCCCATTTCGGATTCATTATGTAGTAGATGAATGGGTATTTGGAG 6601 Query 153680 ATTTTATGTGTAAAGTAATTTCTGTATCTTATTATATAGGATTTTTTAGTAATATGTTTT 153739 || ||||| ||| | ||||||| | |||||| || | || | |||| | |||| Sbjct 6600 ATGCAATGTGCAAAATTATTTCTGGAATCTATTATTTAAGCTTCTATAGTGGAAGCTTTT 6541 Query 153740 TGATTACATTAATGAGTATAGATAGATATTTTGCAATTTTATATCCAATAAGTTTTCA-- 153797 | || | | ||| ||| ||| | ||||| ||||| | ||| || | |||| || Sbjct 6540 TCATAATCCTCTTGACTATTGATCGGTATTTAGCAATAGTCTATGCAGT--GTTTGCATT 6483 Query 153798 AAAATATAGAACATTTAATAT-TGGATTAATATTATGCATTATTACATGG 153846 |||| ||||| | || | | ||| | || | |||||||||| ||| Sbjct 6482 AAAAGCCAGAAC-TGTATTCTATGGCATCATCACAAGCATTATTACCTGG 6434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526023828060800