Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 113 5e-20
seq240708 91.5 2e-13
>seq236318
Length=20466
Score = 113 bits (124), Expect = 5e-20
Identities = 114/147 (78%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546
|||| || |||| |||| ||||| || | ||||||||||| || | || |||||||
Sbjct 6260 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAG 6202
Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAAC 21606
|||| || || | |||||||||||| ||||| | || |||||||| || || |||||
Sbjct 6201 ACCTCGTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 6142
Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633
||||||||||| |||| ||||||||
Sbjct 6141 TGCAGCAAATGCTACTACACGTTCACC 6115
Score = 93.3 bits (102), Expect = 4e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||| ||||| ||||| || | ||| |||||| | ||||||| | |||||
Sbjct 7754 TTTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAGGACTTGACATCACACCCATCC 7695
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||||| || | || | |||||| || ||||| ||||| ||||||| || ||| |
Sbjct 7694 TTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCT 7635
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279
||||||| ||||||||||| |||| || |||||
Sbjct 7634 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 7601
>seq240708
Length=9485
Score = 91.5 bits (100), Expect = 2e-13
Identities = 197/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 153560 ATaaaaaaataaaaaCAATCACGGATATCTATATATTCAATTTAGCAATTTCTGATTTAA 153619
|||| ||| | |||| || || ||||| ||| |||| |||||||| ||||||||||||
Sbjct 6720 ATAAGAAATTCAAAAGTATGACTGATATATATCTATTAAATTTAGCCATTTCTGATTTAT 6661
Query 153620 TATTTGTTATAGATTTCCCATTCATAATCTATAATGAGTTTGATCAATGGATATTTGGTG 153679
| || || | ||||||| || || ||| | ||| ||||| ||||||| |
Sbjct 6660 TTTTCATTTTCTCAATCCCATTTCGGATTCATTATGTAGTAGATGAATGGGTATTTGGAG 6601
Query 153680 ATTTTATGTGTAAAGTAATTTCTGTATCTTATTATATAGGATTTTTTAGTAATATGTTTT 153739
|| ||||| ||| | ||||||| | |||||| || | || | |||| | ||||
Sbjct 6600 ATGCAATGTGCAAAATTATTTCTGGAATCTATTATTTAAGCTTCTATAGTGGAAGCTTTT 6541
Query 153740 TGATTACATTAATGAGTATAGATAGATATTTTGCAATTTTATATCCAATAAGTTTTCA-- 153797
| || | | ||| ||| ||| | ||||| ||||| | ||| || | |||| ||
Sbjct 6540 TCATAATCCTCTTGACTATTGATCGGTATTTAGCAATAGTCTATGCAGT--GTTTGCATT 6483
Query 153798 AAAATATAGAACATTTAATAT-TGGATTAATATTATGCATTATTACATGG 153846
|||| ||||| | || | | ||| | || | |||||||||| |||
Sbjct 6482 AAAAGCCAGAAC-TGTATTCTATGGCATCATCACAAGCATTATTACCTGG 6434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526023828060800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |