Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 129 7e-25
seq15708 111 2e-19
seq85828 95.1 1e-14
>seq236318
Length=20466
Score = 129 bits (142), Expect = 7e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||||||||| || || || ||||| || ||||| |||||||| || || || |
Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| || || || || |||||||||||||||||||| ||||||||||| |
Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131
Query 33446 C 33446
|
Sbjct 6130 C 6130
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/144 (76%), Gaps = 5/144 (3%)
Strand=Plus/Minus
Query 32953 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTGA---GACATAACTCC 33008
|| ||||| || || |||| |||| || ||| |||||| | || ||||| || ||
Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700
Query 33009 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33068
||| |||| ||||| || ||||||||||| || |||||||| || ||||||| || ||
Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640
Query 33069 ATTTTCCATGAAATCAAACGGATT 33092
||| ||||| || ||||| |||||
Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614
||| ||| ||| |||| |||||||| || | | |||||||||||| |||||||| ||
Sbjct 4416 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATT 4357
Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674
|| ||||| ||||| || || |||||||| | || || || | |||| |||| |
Sbjct 4356 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTCTTGGCT 4297
Query 33675 AAATCGTTCCGCC 33687
||||| ||| ||
Sbjct 4296 GAATCGCTCCACC 4284
>seq15708
Length=5494
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| ||||| ||||||||||| || || || || ||||||| || | ||| ||
Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447
||||||||||||| || || | |||||||||||||| ||||| || |||||||| |||
Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310
Query 33448 ATAAGTCTCTCTCC 33461
| | ||| || ||
Sbjct 5309 ACCACTCTTTCACC 5296
>seq85828
Length=2831
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/193 (71%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| || |||||||| || || ||| ||| | || || || || ||||| |
Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | ||| || || || ||||||||||| |||||||| || ||||| || | ||| ||||
Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 62238
| || | || ||||| | || || || | |||| | || || |||| | ||
Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273
Query 62239 TATTCTGAATGGA 62251
||||||| | |||
Sbjct 272 TATTCTGGAAGGA 260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 616064256387200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |