Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq236318 129 7e-25 seq15708 111 2e-19 seq85828 95.1 1e-14 >seq236318 Length=20466 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| || || || ||||| || ||||| |||||||| || || || | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || || || || |||||||||||||||||||| ||||||||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 33446 C 33446 | Sbjct 6130 C 6130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 32953 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTGA---GACATAACTCC 33008 || ||||| || || |||| |||| || ||| |||||| | || ||||| || || Sbjct 7758 TTCCTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACC 7700 Query 33009 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33068 ||| |||| ||||| || ||||||||||| || |||||||| || ||||||| || || Sbjct 7699 CATCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGAT 7640 Query 33069 ATTTTCCATGAAATCAAACGGATT 33092 ||| ||||| || ||||| ||||| Sbjct 7639 ATTCTCCATAAAGTCAAATGGATT 7616 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||| |||| |||||||| || | | |||||||||||| |||||||| || Sbjct 4416 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATT 4357 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || ||||| ||||| || || |||||||| | || || || | |||| |||| | Sbjct 4356 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTCTTGGCT 4297 Query 33675 AAATCGTTCCGCC 33687 ||||| ||| || Sbjct 4296 GAATCGCTCCACC 4284 >seq15708 Length=5494 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||||||||| || || || || ||||||| || | ||| || Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||||| || || | |||||||||||||| ||||| || |||||||| ||| Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310 Query 33448 ATAAGTCTCTCTCC 33461 | | ||| || || Sbjct 5309 ACCACTCTTTCACC 5296 >seq85828 Length=2831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || || ||| ||| | || || || || ||||| | Sbjct 452 TCCAGCCGTAGAAGTGCATACTGGTCAGCTTGCCATAGTTGGGCTCCGCAATGTGGATGT 393 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || || ||||||||||| |||||||| || ||||| || | ||| |||| Sbjct 392 TGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGATGGTCT 333 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG--- 62238 | || | || ||||| | || || || | |||| | || || |||| | || Sbjct 332 TCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTCTGGGA 273 Query 62239 TATTCTGAATGGA 62251 ||||||| | ||| Sbjct 272 TATTCTGGAAGGA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616064256387200