Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 109 5e-19
seq236318 93.3 4e-14
seq24600 82.4 6e-11
>seq311453
Length=2514
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|||||||| | ||||| || || || || || ||| | || ||| | || || ||| ||
Sbjct 621 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 562
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| |||||||||||| | ||||| ||||| ||||| |||||||| ||||||||
Sbjct 561 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGAC 502
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||||| ||||| | | || |||||| | ||||||| | | | || || ||
Sbjct 501 CAGCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTAC 442
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| ||||| ||||| ||
Sbjct 441 AACATCCAAAAGGAATCCAC 422
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || || ||||||||| | || ||| | || || || |||
Sbjct 390 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGT 331
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | ||||| ||||| |||||||||||||| |||||||| ||
Sbjct 330 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 271
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | | ||||| || || ||||| | | | | | || || || |||
Sbjct 270 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAAC 211
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || || || ||
Sbjct 210 ATCCAGAAGGAGTCCAC 194
>seq236318
Length=20466
Score = 93.3 bits (102), Expect = 4e-14
Identities = 76/91 (84%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 104589 TTTG-TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTAT 104647
|||| ||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 7694 TTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTCT 7635
Query 104648 TCATAAATTCGAAAGGATTCAAAGTCTTAAA 104678
|||||| || || |||||| || ||| ||
Sbjct 7634 CCATAAAGTCAAATGGATTCTCAGCCTTGAA 7604
>seq24600
Length=2898
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || || ||||| || | |||||| | || || ||| | |
Sbjct 204 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGAGCCAAGT 145
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | || || || || |||||||||||||| ||||| || |||
Sbjct 144 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 85
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||||| ||||| | | || ||||| || |||||
Sbjct 84 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGA 50
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425304396207600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |