Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq39449 100 3e-16
seq311453 93.3 4e-14
seq24600 89.7 5e-13
>seq39449
Length=2664
Score = 100 bits (110), Expect = 3e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | || ||||||| ||| | ||||| || |||||||| ||||| || ||||| |
Sbjct 1371 TGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 1430
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| || |||| |||||| | |||||||||||||||||| ||| || |||||| ||| |
Sbjct 1431 TGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGAG 1490
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 1491 ACTCAATGAT 1500
>seq311453
Length=2514
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | || ||| || || | || | || |||||||| || |||||||| ||
Sbjct 163 GCCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 222
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| ||| || ||||| ||||| || |||| | | ||||||||| |||||
Sbjct 223 GAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGG 282
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||||||||| ||| || ||||| | || | || || ||| || |
Sbjct 283 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCAC 342
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | |||||| || || | || || || || |||||||||
Sbjct 343 CTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATG 391
>seq24600
Length=2898
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 131031 ATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTG 131090
||| | ||| |||||||| || |||||||| || | |||||| ||| || |||||
Sbjct 1 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTG 60
Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150
||| || || |||| | | ||| ||||| ||||| || ||||||||||| ||||||
Sbjct 61 CTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 120
Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210
||| | | ||| | || || | | ||| | || | ||||| ||| || || ||
Sbjct 121 GGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGT 180
Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234
| || || || || ||||||||
Sbjct 181 CAAGGTCTTCACAAAGATCTGCAT 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 466797530572800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |