Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq341558 118 7e-22 seq24600 107 1e-18 seq801391 98.7 7e-16 seq311453 91.5 1e-13 >seq341558 Length=4222 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| Sbjct 1936 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 1995 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||||| Sbjct 1996 TCATCCATTCATGCATGTCACTAATTAGATGACGA 2030 >seq24600 Length=2898 Score = 107 bits (118), Expect = 1e-18 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||| || | ||| || ||| |||||| || || ||||| ||||| Sbjct 439 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 498 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || ||||| || |||||||| || | | || ||||| | || Sbjct 499 AGGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGA 558 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267 | |||||| |||||| ||||| ||||||||||| | || | ||||| || Sbjct 559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGT---CACTTGGCTCC 615 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || || | ||||| || || || |||||||| ||||| || |||||||| ||||| Sbjct 616 ACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTTTTA 671 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| || ||| |||||| || || ||||| ||||| | || |||| || | || Sbjct 1 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTG 60 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || || | ||||| || | || | ||||||||||||| ||||| Sbjct 61 CTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 120 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGTTTTACC 38290 ||||||||||| | || | ||||| || || |||| ||||| || || || Sbjct 121 GGCCTTCACATTCTCAATGGTGT---CACTTGGCTCCACCTCTAGGGTAATGGTCTTCCC 177 Query 38291 CGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| Sbjct 178 AGTCAAGGTCTTCACAAAGATCTGCAT 204 >seq801391 Length=505 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 128 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 69 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 68 GCCGGTATTTAGCCTTA 52 >seq311453 Length=2514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || |||||| |||||| || || ||||| ||||| Sbjct 164 CCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 223 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | ||||| || ||||| || || | || || |||| || Sbjct 224 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 283 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||| ||||| | | || || | ||| || Sbjct 284 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 343 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || ||||| || |||||||| || || || ||||||||| Sbjct 344 TCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATG 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331338889177520