Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq24600 116 3e-21
seq311453 96.9 3e-15
>seq24600
Length=2898
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || |||| || | || |||||| | |
Sbjct 665 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCAAGT 606
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| |||||| ||||| ||||| ||||| ||||| ||
Sbjct 605 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 546
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| ||||| ||||||| ||||| | || |||||
Sbjct 545 CAGAGGTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 486
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||| | || ||
Sbjct 485 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 454
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || |||| || | || |||||| | |
Sbjct 204 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGAGCCAAGT 145
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| |||||| ||||||||||| ||||| |||||||||
Sbjct 144 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 85
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || || | ||||| | ||||| | || |||||
Sbjct 84 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAAC 25
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
|| || || || ||||| || |||
Sbjct 24 ATCCAGAAGGAGTCCACCCTCCAT 1
>seq311453
Length=2514
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || ||| ||||||| | || ||||| | |
Sbjct 390 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGT 331
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| ||||||||||| ||||| || |||||
Sbjct 330 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 271
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| |||||||| | ||||| | ||||| | || |||||
Sbjct 270 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAAC 211
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 210 ATCCAGAAGGAGTCCACTCTCCA 188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428659854954800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |