Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq15708 96.9 4e-15 seq236318 91.5 2e-13 >seq15708 Length=5494 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || ||||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 2779 ATGTAAGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGATATTTGG 2720 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | |||||| | ||||||||||||||| Sbjct 2719 AAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTCTTG 2679 >seq236318 Length=20466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || ||||| |||||||| |||||||| | ||| ||||| || Sbjct 883 ACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 824 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| || || Sbjct 823 TATTGAATAGGAAAAATGACAAAACGGTGAGGATTGTC 786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || | || || | || ||||||||||| |||||||||||| Sbjct 6236 ATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTCAGCCAAAATATT 6177 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||| |||||||| || || ||||| || || |||||||| || | |||||| Sbjct 6176 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTACACGTTC 6118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550708045020800