Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 170 3e-37
seq24600 141 2e-28
seq433667 129 1e-24
seq99924 96.9 6e-15
seq26672 87.8 3e-12
>seq311453
Length=2514
Score = 170 bits (188), Expect = 3e-37
Identities = 164/209 (78%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || ||||||||||| || || ||||| || | |||||||| |
Sbjct 411 CAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCA 470
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
| |||||||| || || || || || || |||||||| || ||||||||||||||||| |
Sbjct 471 ATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGA 530
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| |||||||| |||||||||||| | || || || | |||||||||||| |
Sbjct 531 TCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 590
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || | |||||| || || |||||||||
Sbjct 591 CGGTCAAGGTCTTCACAAAGATCTGCATT 619
Score = 165 bits (182), Expect = 1e-35
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || || ||||| || | || |||||
Sbjct 182 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 241
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || || || || || || |||||||| ||||||||||| ||||| ||
Sbjct 242 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGG 301
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| |||||||| || |||||||| | ||| || |||| |||||||||||||
Sbjct 302 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTT 361
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || | ||||||||| || ||||||||
Sbjct 362 CCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| || || || || || || || || |||||||| ||||||||||||
Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || ||||| ||||||||| || |||||||| | || || || | ||
Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTT 124
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||| || | ||||||||| || || |||||
Sbjct 125 ATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq24600
Length=2898
Score = 141 bits (156), Expect = 2e-28
Identities = 157/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || |||||||| || |||||||| || || ||||| || | |||||||| |
Sbjct 458 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 517
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
| ||||| ||||| || || | || || || || || ||||||||||||||||| || |
Sbjct 518 ATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 577
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
| || ||||| || ||| |||||||| || || || |||| ||| ||||| || |
Sbjct 578 TTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTGC 637
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || | |||||| || || ||||||||
Sbjct 638 CAGTCAAGGTCTTCACAAAGATCTGCAT 665
Score = 132 bits (146), Expect = 9e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || |||||||| || || || || || | || ||||| | ||||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || || || |||||||| || ||||||||||| ||||| || || ||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| || ||| |||||||| || || || || | ||| ||||| || || ||
Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| |||||| || || ||||||||
Sbjct 182 AAGGTCTTCACAAAGATCTGCAT 204
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396
|| || || || || ||||||||||||||||| || || || ||||| || ||| |||
Sbjct 313 CTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATG 372
Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456
||||| || || || |||| ||| ||||| || || || | |||||| || || |||
Sbjct 373 GTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGATC 432
Query 68457 TGCAT 68461
|||||
Sbjct 433 TGCAT 437
>seq433667
Length=2244
Score = 129 bits (142), Expect = 1e-24
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || |||||||| || |||||||| || || ||||| || |
Sbjct 156 AGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 97
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| || || || || || || || || || ||||| ||||||||||||
Sbjct 96 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 37
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
||||| || ||||| |||||||| ||||||||||
Sbjct 36 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTG 1
>seq99924
Length=25621
Score = 96.9 bits (106), Expect = 6e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330
||||| |||||||| || || || ||||| | |||||| | | |||||| || || ||
Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047
Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390
|| || || |||||||| | ||||||||||||||||| || || || ||||| || |
Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987
Query 68391 TCGATGGT 68398
|| |||||
Sbjct 22986 TCAATGGT 22979
>seq26672
Length=7677
Score = 87.8 bits (96), Expect = 3e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
||||||||||| ||||| ||||||||||| || || ||||| || || || ||
Sbjct 2175 CCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTCA 2116
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
| |||||||||||| || |||||||| || || || ||||||||| ||
Sbjct 2115 AGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCATTGTG 2068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 911439394102400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |