Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq311453 170 3e-37 seq24600 141 2e-28 seq433667 129 1e-24 seq99924 96.9 6e-15 seq26672 87.8 3e-12 >seq311453 Length=2514 Score = 170 bits (188), Expect = 3e-37 Identities = 164/209 (78%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || ||||||||||| || || ||||| || | |||||||| | Sbjct 411 CAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCA 470 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | |||||||| || || || || || || |||||||| || ||||||||||||||||| | Sbjct 471 ATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGA 530 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| |||||||||||| | || || || | |||||||||||| | Sbjct 531 TCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCC 590 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||| || || ||||||||| Sbjct 591 CGGTCAAGGTCTTCACAAAGATCTGCATT 619 Score = 165 bits (182), Expect = 1e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || ||||| || | || ||||| Sbjct 182 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 241 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || || || || |||||||| ||||||||||| ||||| || Sbjct 242 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGG 301 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| || |||||||| | ||| || |||| ||||||||||||| Sbjct 302 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTT 361 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||||||| || |||||||| Sbjct 362 CCAGTCAAGGTCTTGACAAAGATCTGCAT 390 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || || || || || || || || |||||||| |||||||||||| Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| || |||||||| | || || || | || Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTT 124 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || | ||||||||| || || ||||| Sbjct 125 ATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162 >seq24600 Length=2898 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 458 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 517 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| ||||| || || | || || || || || ||||||||||||||||| || | Sbjct 518 ATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGA 577 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || ||||| || ||| |||||||| || || || |||| ||| ||||| || | Sbjct 578 TTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTGC 637 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||| || || |||||||| Sbjct 638 CAGTCAAGGTCTTCACAAAGATCTGCAT 665 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || || || || || | || ||||| | |||| Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || || |||||||| || ||||||||||| ||||| || || || Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || ||| |||||||| || || || || | ||| ||||| || || || Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||| Sbjct 182 AAGGTCTTCACAAAGATCTGCAT 204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || || || || ||||||||||||||||| || || || ||||| || ||| ||| Sbjct 313 CTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATG 372 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| || || || |||| ||| ||||| || || || | |||||| || || ||| Sbjct 373 GTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGATC 432 Query 68457 TGCAT 68461 ||||| Sbjct 433 TGCAT 437 >seq433667 Length=2244 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || ||||| || | Sbjct 156 AGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 97 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || || || || || || || || || ||||| |||||||||||| Sbjct 96 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 37 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || ||||| |||||||| |||||||||| Sbjct 36 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTG 1 >seq99924 Length=25621 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 ||||| |||||||| || || || ||||| | |||||| | | |||||| || || || Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || || |||||||| | ||||||||||||||||| || || || ||||| || | Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987 Query 68391 TCGATGGT 68398 || ||||| Sbjct 22986 TCAATGGT 22979 >seq26672 Length=7677 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| ||||||||||| || || ||||| || || || || Sbjct 2175 CCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTCA 2116 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||| || |||||||| || || || ||||||||| || Sbjct 2115 AGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCATTGTG 2068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911439394102400