Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq133452 147 4e-30 seq39449 136 7e-27 seq321951 123 5e-23 seq85828 89.7 1e-12 seq15708 89.7 1e-12 >seq133452 Length=4818 Score = 147 bits (162), Expect = 4e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 ||||||| |||||||||| ||||||| |||||| ||||| | ||| |||| |||| Sbjct 565 TGCTGACCGGGCTGCCCTGGTAGGTCTCGTAGGGCCCGTCTTCCCTGGCGAGCTGGCAGC 506 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-GGGCC 244444 | | || ||||| |||||||||||||||||||||| || ||| | | || ||||| Sbjct 505 TGGCCTCCAGGGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGA-GCAGCTGGGCC 447 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || |||||||| | ||| | |||||| |||||||||| |||||||| || Sbjct 446 TCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCA 387 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||||| ||||| | ||| ||| |||||||| Sbjct 386 ATGCCAATGGGGCGGTGGCGCCTGTTGGAG 357 >seq39449 Length=2664 Score = 136 bits (150), Expect = 7e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 |||| | ||||||| || | ||||||||| |||||||||||||||||||| ||||| Sbjct 1345 GCAGCAGCCCACCTCATCATTGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCA 1404 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 ||||||||||||||||| ||| || ||| ||| |||||||| ||||||||||||||| Sbjct 1405 CTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCAT 1464 Query 244816 GAAGGGCCCCCCGGTCTC 244833 | |||| ||| ||||| Sbjct 1465 GTAGGGTGTCCCCGTCTC 1482 >seq321951 Length=5427 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | |||||||||||| ||||||||||| || | || ||||||| | ||||||| Sbjct 574 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGC 633 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| ||| || | ||| ||||||| ||| | |||||||||| Sbjct 634 TCCTCCTTCCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGC 693 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| ||| ||||| Sbjct 694 TCCAGGTAGATGGCGAAGGCCCCGGG 719 >seq85828 Length=2831 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || |||||| |||||||||||||||| ||||| | ||| || || ||||| | | || Sbjct 397 GATGTTGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCTGTCAGCTGCCATCTTCAGGAT 338 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| | || |||||| | | | Sbjct 337 GGTCTTCTGCGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAAGTCCTCGGGAATCTC 278 Query 243994 TTCGATGTTCTG 244005 | ||| ||||| Sbjct 277 TGGGATATTCTG 266 >seq15708 Length=5494 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || ||||| ||||||||||| || || || || || |||| || | Sbjct 5306 TGGTTGCGTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGTGCTTTTGCAGCCATATTTT 5365 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||||||| ||| | || ||||| || || || ||||| |||||||| || ||||| | Sbjct 5366 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAACGAACTTATTAGCAGAG 5425 Query 42826 ACGA 42829 | || Sbjct 5426 ATGA 5429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 933905196179200