Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 102 9e-17
seq410886 91.5 2e-13
seq355047 91.5 2e-13
seq19119 89.7 6e-13
>seq311453
Length=2514
Score = 102 bits (112), Expect = 9e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| || || | ||||| || | ||| | ||| |||||||| || ||||| || |
Sbjct 392 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAG 451
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || | ||||| ||||| || || || | ||||||||||| ||
Sbjct 452 AGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 511
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || |||||||| ||| || |||| || | | ||||| || | |||||
Sbjct 512 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 571
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212
|| | ||||||||||| || || | ||||| |||||||| |||||||||
Sbjct 572 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTTC 622
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| |||| || || || |||| || ||||| || ||||| ||
Sbjct 199 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAA 258
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | ||||||||||| || | || || |||||| ||| || |||| |
Sbjct 259 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 318
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| || | |||||| || | ||||||||||| || || | ||||| ||
Sbjct 319 TTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGAC 378
Query 42197 AAAGATTTGCAT 42208
|||||| |||||
Sbjct 379 AAAGATCTGCAT 390
>seq410886
Length=983
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 374 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 315
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 314 ATACTAACGAGGA 302
>seq355047
Length=665
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/84 (85%), Gaps = 3/84 (4%)
Strand=Plus/Minus
Query 56998 AAAAATTT---TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|||||||| ||||| || | | |||||||||| ||||||||||||||||||||| |
Sbjct 203 AAAAATTTACCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 144
Query 57055 TACTCACCACTATACTACCGAGGA 57078
|||| |||||||||||| ||||||
Sbjct 143 TACTTACCACTATACTAACGAGGA 120
>seq19119
Length=31651
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 8181 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 8240
Query 57065 TATACTACCGAGGA 57078
||||||| ||||||
Sbjct 8241 TATACTAACGAGGA 8254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537210841772800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |