Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 136 4e-27
seq24600 118 1e-21
seq433667 82.4 8e-11
>seq311453
Length=2514
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||| ||||| |||||||| |||| || ||||| | |||
Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| || ||| | || |||| ||||||||||||||| || ||||| || |||
Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || ||||| |||| || | |||
Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 586
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| |||||||| || || || || || ||||||||
Sbjct 587 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621
Score = 122 bits (134), Expect = 9e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | || |||||| ||||||| ||||| |||||
Sbjct 194 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCA 253
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| |||||||||||||||||| |||||||| || || || || |||
Sbjct 254 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 313
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || |||| || ||||| || | || | ||| || || ||||| ||
Sbjct 314 ACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTC 373
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 374 TTGACAAAGATCTGCAT 390
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348
||||| ||||| ||||| ||| | || |||| |||||||||||||||||| ||||| ||
Sbjct 8 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 67
Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408
|| || || || ||| || || | || |||| || ||||| || | |||| |
Sbjct 68 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTATG 127
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || |||||||| || || || || ||||||||
Sbjct 128 GTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq24600
Length=2898
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || || |||||||| || | || |||||| | |||
Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||||||||| | || | || |||||| || |||||||| ||||| || ||
Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || |||| | ||||| || | || | ||||
Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTC 633
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| ||||| || || || || || ||||| ||
Sbjct 634 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668
>seq433667
Length=2244
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | || ||| || | ||||| ||||| |||||
Sbjct 135 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCA 76
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| | || |||| |||||| ||||||||||| ||||| || || || || ||
Sbjct 75 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494124224604800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |