Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq311453 136 4e-27 seq24600 118 1e-21 seq433667 82.4 8e-11 >seq311453 Length=2514 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| ||||| |||||||| |||| || ||||| | ||| Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | || |||| ||||||||||||||| || ||||| || ||| Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| |||| || | ||| Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 586 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || |||||||| || || || || || |||||||| Sbjct 587 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| ||||||| ||||| ||||| Sbjct 194 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCA 253 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| |||||||| || || || || ||| Sbjct 254 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 313 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||| || || ||||| || Sbjct 314 ACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTC 373 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 374 TTGACAAAGATCTGCAT 390 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| ||||| ||||| ||| | || |||| |||||||||||||||||| ||||| || Sbjct 8 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 67 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || || | || |||| || ||||| || | |||| | Sbjct 68 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTATG 127 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || || |||||||| Sbjct 128 GTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162 >seq24600 Length=2898 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||||||||| | || | || |||||| || |||||||| ||||| || || Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| | ||||| || | || | |||| Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTC 633 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| ||||| || || || || || ||||| || Sbjct 634 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668 >seq433667 Length=2244 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||| || | ||||| ||||| ||||| Sbjct 135 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCA 76 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || |||| |||||| ||||||||||| ||||| || || || || || Sbjct 75 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494124224604800