Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq39449 98.7 1e-15
seq311453 95.1 1e-14
seq24600 93.3 4e-14
>seq39449
Length=2664
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||||| ||| ||||||| ||||||||||||||| || ||| ||||| || ||||| |
Sbjct 1371 TGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 1430
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751
|||| || || ||||| | ||| ||| |||||||||| ||| || |||||
Sbjct 1431 TGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTC 1482
>seq311453
Length=2514
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || ||| || || ||||| || | |
Sbjct 197 GACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCA 256
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| ||||| || ||||||||||| ||| || || |
Sbjct 257 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACA 316
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | |||||| | | |||||||| | || | ||||| ||||||| || ||
Sbjct 317 TTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTG 376
Query 138601 ACAAAAATCTGCATG 138615
||||| |||||||||
Sbjct 377 ACAAAGATCTGCATG 391
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || | || ||||| || | ||| | | | || |||||||| |||||||||||
Sbjct 391 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGA 450
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || || | ||| || || | | |||| || | ||| ||||| |||||
Sbjct 451 GAGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGG 510
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | |||||| | | ||||||
Sbjct 511 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 570
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||||| || |||| || || ||||| ||||||||
Sbjct 571 CTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 618
>seq24600
Length=2898
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || ||| || || || || || | |
Sbjct 11 GACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCA 70
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||||||||| ||||| || ||||||||||| |||||| || |
Sbjct 71 AAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACA 130
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | || || ||||||| || ||
Sbjct 131 TTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAGGTCTTC 190
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 191 ACAAAGATCTGCAT 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 490779196742400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |