Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq307280 147 3e-30
seq356429 109 8e-19
>seq307280
Length=12320
Score = 147 bits (162), Expect = 3e-30
Identities = 204/283 (72%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
|| || ||||||||||| |||| |||| || | | || || ||||| |||||
Sbjct 7592 GGGCAGCCCTTCACATTATGGCAAACGAGGCTTTGGAGTGAGGCTGTATTCACAATGTCA 7651
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|| || || | || || || || || || |||||||| | || ||||||||||||||
Sbjct 7652 AAGCCAACTGCACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTT 7711
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
||| ||| ||||||||||| || |||||||| || || || ||| | ||||| |||| |
Sbjct 7712 CCCAGGAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGACG 7771
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132
|| || ||||| || ||||| || | |||| ||| || | ||| | ||| || | ||
Sbjct 7772 GCTCCAGGACGTGGCTTTTCAAC-AAGAAGAGCAGGATATAATTCCATAGCATCAATATC 7830
Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|||||||| ||| | || ||||| || || || ||||||
Sbjct 7831 TCCATAGAGTTCTTGAAGTTCTGCAGCCATTTCTTTTTCACCT 7873
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| ||||| || | || ||| ||||||| |||||||| ||| |||| || ||||||
Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
| || ||||| | ||||| | ||||| |||||||| || || || || || |||||
Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | || || | ||| ||| | || || || | ||| | ||| | ||| |
Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
||| || ||||| || || || ||||||||||| || ||||| | |||
Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137
Score = 93.3 bits (102), Expect = 6e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
||||||||||| || | ||| || | ||| ||| | || | || |||| |
Sbjct 9912 ATGGAATTGTTATACATGAACTGCTGGTATGTATATTCTTGGTTTTCAATATGAAAGGTA 9971
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| |||| ||||||| ||||||| ||||||||||| || ||||||| ||||||
Sbjct 9972 TCAGGCAGAAGAGGATGCCAGTGGTAGAGAGTATTGAACTCTGCTGCTATTCTGTTCTGA 10031
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| ||||| ||| ||| || | || || ||||| | || | ||| ||||| |
Sbjct 10032 TATTGAAATCTCTGGT--TGAAGAGAAGTTCTGGATCAAACTTCAGTTTGAAATGGTATC 10089
Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| || | || || ||||| | | || | ||| || |||||||| ||
Sbjct 10090 CACTTAAATGTTGCACATAGTCTTCAATCACAATCTTGATGGTTTCTCC 10138
>seq356429
Length=1100
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993
|||| || || ||||| || || || | || || || |||||||| ||||||||
Sbjct 812 TTGCCGTGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATT 871
Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053
| |||||||||||| |||| ||| ||||| |||||||| || |||||||||| |||||
Sbjct 872 CGGGGGAGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGA 931
Query 9054 TGATGCTCTCACCGAAGATG 9073
| ||||| || || ||||||
Sbjct 932 TCATGCTTTCTCCAAAGATG 951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715731529328000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |