Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq307280 147 3e-30 seq356429 109 8e-19 >seq307280 Length=12320 Score = 147 bits (162), Expect = 3e-30 Identities = 204/283 (72%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || ||||||||||| |||| |||| || | | || || ||||| ||||| Sbjct 7592 GGGCAGCCCTTCACATTATGGCAAACGAGGCTTTGGAGTGAGGCTGTATTCACAATGTCA 7651 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || | || || || || || || |||||||| | || |||||||||||||| Sbjct 7652 AAGCCAACTGCACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTT 7711 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 ||| ||| ||||||||||| || |||||||| || || || ||| | ||||| |||| | Sbjct 7712 CCCAGGAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGACG 7771 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || ||||| || ||||| || | |||| ||| || | ||| | ||| || | || Sbjct 7772 GCTCCAGGACGTGGCTTTTCAAC-AAGAAGAGCAGGATATAATTCCATAGCATCAATATC 7830 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| ||| | || ||||| || || || |||||| Sbjct 7831 TCCATAGAGTTCTTGAAGTTCTGCAGCCATTTCTTTTTCACCT 7873 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || ||||| || | || ||| ||||||| |||||||| ||| |||| || |||||| Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | || ||||| | ||||| | ||||| |||||||| || || || || || ||||| Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | || || | ||| ||| | || || || | ||| | ||| | ||| | Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 ||| || ||||| || || || ||||||||||| || ||||| | ||| Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||||||||| || | ||| || | ||| ||| | || | || |||| | Sbjct 9912 ATGGAATTGTTATACATGAACTGCTGGTATGTATATTCTTGGTTTTCAATATGAAAGGTA 9971 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| |||| ||||||| ||||||| ||||||||||| || ||||||| |||||| Sbjct 9972 TCAGGCAGAAGAGGATGCCAGTGGTAGAGAGTATTGAACTCTGCTGCTATTCTGTTCTGA 10031 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| ||| ||| || | || || ||||| | || | ||| ||||| | Sbjct 10032 TATTGAAATCTCTGGT--TGAAGAGAAGTTCTGGATCAAACTTCAGTTTGAAATGGTATC 10089 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | || | || || ||||| | | || | ||| || |||||||| || Sbjct 10090 CACTTAAATGTTGCACATAGTCTTCAATCACAATCTTGATGGTTTCTCC 10138 >seq356429 Length=1100 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993 |||| || || ||||| || || || | || || || |||||||| |||||||| Sbjct 812 TTGCCGTGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATT 871 Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053 | |||||||||||| |||| ||| ||||| |||||||| || |||||||||| ||||| Sbjct 872 CGGGGGAGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGA 931 Query 9054 TGATGCTCTCACCGAAGATG 9073 | ||||| || || |||||| Sbjct 932 TCATGCTTTCTCCAAAGATG 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715731529328000