Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 129 1e-24
seq24600 118 2e-21
seq433667 102 2e-16
>seq311453
Length=2514
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||||||||| |||||||| |||| ||||||||||| | || | || |||
Sbjct 179 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 238
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || || || ||||| || | ||||||||| ||| ||| |||||| |||
Sbjct 239 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCC 298
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || ||| | |||||| | | ||| || |||| ||||| ||
Sbjct 299 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTT 358
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || ||||| || ||
Sbjct 359 TTTCCAGTCAAGGTCTTGACAAAGATCTG 387
>seq24600
Length=2898
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || |||||||| |||| ||||||||||| | || | |||||
Sbjct 453 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 512
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| ||||| ||||| ||||| | | |||||| || ||| ||| ||||| ||
Sbjct 513 TTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 572
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| || || |||||| || | |||||| ||| || || |||| || || ||
Sbjct 573 CTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGT 632
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || | || |||||||| || ||
Sbjct 633 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 662
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
||||| || |||||||| |||| ||||||||||| | || | || ||||||||||||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
||||| || ||||| || | ||| ||||| ||| ||| |||||| ||||| || ||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
|||||| || | |||||| ||| || || || | || || ||||| || ||
Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| || |||||||| || ||
Sbjct 182 AAGGTCTTCACAAAGATCTG 201
>seq433667
Length=2244
Score = 102 bits (112), Expect = 2e-16
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| |||||||| || |||||||| |||| ||||||||||| | || | |||||
Sbjct 151 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATC 92
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || || || ||||| || | |||||| || ||| ||| ||||| ||
Sbjct 91 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 32
Query 199537 CTGAATCTT 199545
||| |||||
Sbjct 31 CTGGATCTT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1165570047622640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |