Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7881 230 9e-55 seq308505 102 3e-16 seq88391 87.8 7e-12 >seq7881 Length=13965 Score = 230 bits (254), Expect = 9e-55 Identities = 1033/1608 (64%), Gaps = 59/1608 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || || || | || ||||| | || || || || |||| ||| | || || Sbjct 4443 GCCATAGGCATCGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 4502 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || ||||| || | || |||||| Sbjct 4503 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGTTATGTTGCCTTTACG 4562 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | || | || || || ||||| | || ||| |||| | Sbjct 4563 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATG--AATCCCAACA 4620 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | ||||| || ||| | || ||||| | | |||||| ||| || || Sbjct 4621 ACACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAATTTGATGACCCTACGGTGCAGT 4680 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | ||| || ||| ||| || | | || || |||||| | | |||| Sbjct 4681 CCGATATGAAACACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTGCAAG 4740 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | || || ||||| | || | ||| ||||||||||||||| |||||||| | | Sbjct 4741 TCGAGTACAAGGGTGAGAACAAGAATTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 4800 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330 | |||||||| |||| ||| || || | |||| ||| | || ||| |||||| Sbjct 4801 CCAAAATGAAGGAAATAGCCGAGGCTTACTTGGGTTGCAAAGTC-CAGAGTGCTGTAATT 4859 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| | ||||| ||||| || ||||||||||| ||| Sbjct 4860 ACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGGTACCATT 4919 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||| | || || | || || |||||||| || || || ||||| | || ||||| Sbjct 4920 ACAGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCCGCTGCCATTGCCTATGG- 4978 Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | ||| || || || | ||| || || || | | | ||||| || ||||| Sbjct 4979 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAACGTGCTGATCTTTGACTTGGGTGG 5038 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| ||| | | | ||||||||||| | |||||||| || | || Sbjct 5039 TGGCACATTTGATGTTTCCATTTTGACCATTGAAGATGGCATCTTTGAAGTGAAATCTAC 5098 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG---GAATGGTT 451623 ||| ||||| || | || || || || |||| ||| || ||| | | | Sbjct 5099 TGCTGGAGATACCCACTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGTCACTTTGT 5158 Query 451624 GAAAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTT 451681 | || || ||||| || || | ||| || || ||| || ||| | |||| || Sbjct 5159 GGAA---GA-ATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTT 5213 Query 451682 AGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA-- 451739 |||| || ||| | || | ||| ||| ||| || || || | | | | | Sbjct 5214 CGACGGCTCCGCACAGCCTGTGAGAGAGCCAAACGTACCCTGAGCTC--CTCCACCCAGG 5271 Query 451740 CTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTG 451799 || ||| | ||||| ||| ||||||| || |||| ||| | ||||||||| Sbjct 5272 CTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTG 5331 Query 451800 CTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTG 451853 || ||||| |||| || | || | | | |||| | ||||||| | Sbjct 5332 CTCGTTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGG 5385 Query 451854 ATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAG 451913 | | | | | |||| |||| | |||| | ||| |||||||||| || || | Sbjct 5386 AGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTG 5445 Query 451914 GAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGA 451969 | || || || || ||||| || || ||| | || | | |||| ||| ||| Sbjct 5446 GTGGCTCAACTCGTATTCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGA 5501 Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 ||| | ||| || ||| ||||||| ||||||||||| |||||||||||||| || || Sbjct 5502 AAAGAGCTAAACAAAAGCATAAATCCCGATGAAGCTGTAGCATATGGTGCTGCTGTGCAG 5561 Query 452030 GCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088 || |||||||| | ||| || || | ||||| | ||| | ||| | | ||||| Sbjct 5562 GCTGCTATTCTGATGGGTGACAAATCA-GAAAATGTGCAAGACCTCCTGCTGCTTGATGT 5620 Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148 | |||| || ||||| || |||| || |||||||| |||||||| ||||| || || Sbjct 5621 AGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAGCG 5680 Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208 || ||||||| || | | ||| || || | ||| | | | | | ||||| Sbjct 5681 CAACACAACTATTCCCACCAAGCAAACTCAGACCTTCACTAC--CTATTCAGA--CAACC 5736 Query 452209 AG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 || |||| | ||||||| ||| || || | || ||||| || || ||| Sbjct 5737 AGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAACAATC 5796 Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324 || || | ||| || || ||||| ||| || | || || ||||||| Sbjct 5797 TGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTG 5856 Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCA 452383 | | || | ||| | |||||||||||||| || ||||| | |||||| || || | || Sbjct 5857 AGGTGACATTTGACATAGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA 5916 Query 452384 TCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGA 452442 | || ||| |||| || |||||||| |||||||| ||| ||| | ||||| || Sbjct 5917 -CAGG-AAAGGAGAACAAGATTACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATGA 5974 Query 452443 TATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||| ||||| | |||||||| | ||||| || ||||| Sbjct 5975 CATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 6022 >seq308505 Length=989 Score = 102 bits (112), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || ||||| |||||||||||||| | || || ||||| || Sbjct 196 GTTACAAATGCTGTGGTCACAGTTCCAGCTTATTTCAATGACTCCCAGCGCCAAGCTACA 137 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | || || || |||||||| ||||| || || ||| Sbjct 136 AAAGATGCCGGAACCATTGCTGGTCTCAACGTGCTCCGAATTATCAATGAGCCAACCGCA 77 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA 451469 ||||| | || || || || ||| || ||||| || Sbjct 76 GCTGCGATTGCTTACGG-CTTGGACAA--AAAAGTAA 43 >seq88391 Length=12687 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| ||||| |||||||| || |||||| | || |||||||||| || Sbjct 1191 GCCACTAAAGATGCTGGACAGATTGCTGGATTGAATGTTTTGAGAGTTATTAATGAGCCA 1250 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || || ||||| |||||| ||| Sbjct 1251 ACAGCTGCAGCCCTAGCTTATGGATTAG 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1953342944583360