Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq7881 230 9e-55
seq308505 102 3e-16
seq88391 87.8 7e-12
>seq7881
Length=13965
Score = 230 bits (254), Expect = 9e-55
Identities = 1033/1608 (64%), Gaps = 59/1608 (4%)
Strand=Plus/Plus
Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973
|| || || || || | || ||||| | || || || || |||| ||| | || ||
Sbjct 4443 GCCATAGGCATCGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 4502
Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033
|| || ||||| || || |||||||| || ||||| || | || ||||||
Sbjct 4503 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGTTATGTTGCCTTTACG 4562
Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091
|| | ||| | || | || | || || || ||||| | || ||| |||| |
Sbjct 4563 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATG--AATCCCAACA 4620
Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151
|||| | | ||||| || ||| | || ||||| | | |||||| ||| || ||
Sbjct 4621 ACACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAATTTGATGACCCTACGGTGCAGT 4680
Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211
|| | ||| || ||| ||| || | | || || |||||| | | ||||
Sbjct 4681 CCGATATGAAACACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTGCAAG 4740
Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271
| | || || ||||| | || | ||| ||||||||||||||| |||||||| | |
Sbjct 4741 TCGAGTACAAGGGTGAGAACAAGAATTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 4800
Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330
| |||||||| |||| ||| || || | |||| ||| | || ||| ||||||
Sbjct 4801 CCAAAATGAAGGAAATAGCCGAGGCTTACTTGGGTTGCAAAGTC-CAGAGTGCTGTAATT 4859
Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390
||||| || || || |||||||| | ||||| ||||| || ||||||||||| |||
Sbjct 4860 ACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGGTACCATT 4919
Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450
| ||| | || || | || || |||||||| || || || ||||| | || |||||
Sbjct 4920 ACAGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCCGCTGCCATTGCCTATGG- 4978
Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506
| ||| || || || | ||| || || || | | | ||||| || |||||
Sbjct 4979 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAACGTGCTGATCTTTGACTTGGGTGG 5038
Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566
|| || |||| ||| | | | ||||||||||| | |||||||| || | ||
Sbjct 5039 TGGCACATTTGATGTTTCCATTTTGACCATTGAAGATGGCATCTTTGAAGTGAAATCTAC 5098
Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG---GAATGGTT 451623
||| ||||| || | || || || || |||| ||| || ||| | | |
Sbjct 5099 TGCTGGAGATACCCACTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGTCACTTTGT 5158
Query 451624 GAAAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTT 451681
| || || ||||| || || | ||| || || ||| || ||| | |||| ||
Sbjct 5159 GGAA---GA-ATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTT 5213
Query 451682 AGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA-- 451739
|||| || ||| | || | ||| ||| ||| || || || | | | | |
Sbjct 5214 CGACGGCTCCGCACAGCCTGTGAGAGAGCCAAACGTACCCTGAGCTC--CTCCACCCAGG 5271
Query 451740 CTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTG 451799
|| ||| | ||||| ||| ||||||| || |||| ||| | |||||||||
Sbjct 5272 CTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTG 5331
Query 451800 CTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTG 451853
|| ||||| |||| || | || | | | |||| | ||||||| |
Sbjct 5332 CTCGTTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGG 5385
Query 451854 ATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAG 451913
| | | | | |||| |||| | |||| | ||| |||||||||| || || |
Sbjct 5386 AGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTG 5445
Query 451914 GAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGA 451969
| || || || || ||||| || || ||| | || | | |||| ||| |||
Sbjct 5446 GTGGCTCAACTCGTATTCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGA 5501
Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029
||| | ||| || ||| ||||||| ||||||||||| |||||||||||||| || ||
Sbjct 5502 AAAGAGCTAAACAAAAGCATAAATCCCGATGAAGCTGTAGCATATGGTGCTGCTGTGCAG 5561
Query 452030 GCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088
|| |||||||| | ||| || || | ||||| | ||| | ||| | | |||||
Sbjct 5562 GCTGCTATTCTGATGGGTGACAAATCA-GAAAATGTGCAAGACCTCCTGCTGCTTGATGT 5620
Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148
| |||| || ||||| || |||| || |||||||| |||||||| ||||| || ||
Sbjct 5621 AGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAGCG 5680
Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208
|| ||||||| || | | ||| || || | ||| | | | | | |||||
Sbjct 5681 CAACACAACTATTCCCACCAAGCAAACTCAGACCTTCACTAC--CTATTCAGA--CAACC 5736
Query 452209 AG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264
|| |||| | ||||||| ||| || || | || ||||| || || |||
Sbjct 5737 AGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAACAATC 5796
Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324
|| || | ||| || || ||||| ||| || | || || |||||||
Sbjct 5797 TGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTG 5856
Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCA 452383
| | || | ||| | |||||||||||||| || ||||| | |||||| || || | ||
Sbjct 5857 AGGTGACATTTGACATAGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA 5916
Query 452384 TCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGA 452442
| || ||| |||| || |||||||| |||||||| ||| ||| | ||||| ||
Sbjct 5917 -CAGG-AAAGGAGAACAAGATTACAATAACTAATGACAAAGGCCGCCTCAGCAAAGATGA 5974
Query 452443 TATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490
||||| ||||| | |||||||| | ||||| || |||||
Sbjct 5975 CATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 6022
>seq308505
Length=989
Score = 102 bits (112), Expect = 3e-16
Identities = 118/157 (75%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| |||| || | || ||||| |||||||||||||| | || || ||||| ||
Sbjct 196 GTTACAAATGCTGTGGTCACAGTTCCAGCTTATTTCAATGACTCCCAGCGCCAAGCTACA 137
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| ||||||||| | || || || |||||||| ||||| || || |||
Sbjct 136 AAAGATGCCGGAACCATTGCTGGTCTCAACGTGCTCCGAATTATCAATGAGCCAACCGCA 77
Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAA 451469
||||| | || || || || ||| || ||||| ||
Sbjct 76 GCTGCGATTGCTTACGG-CTTGGACAA--AAAAGTAA 43
>seq88391
Length=12687
Score = 87.8 bits (96), Expect = 7e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| ||||||||||| ||||| |||||||| || |||||| | || |||||||||| ||
Sbjct 1191 GCCACTAAAGATGCTGGACAGATTGCTGGATTGAATGTTTTGAGAGTTATTAATGAGCCA 1250
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454
||||| || || ||||| |||||| |||
Sbjct 1251 ACAGCTGCAGCCCTAGCTTATGGATTAG 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1953342944583360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |