Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq7881 374 6e-98
seq253197 96.9 3e-14
seq244066 91.5 1e-12
seq308505 89.7 4e-12
seq296815 89.7 4e-12
seq657547 87.8 1e-11
seq88391 87.8 1e-11
>seq7881
Length=13965
Score = 374 bits (414), Expect = 6e-98
Identities = 941/1414 (67%), Gaps = 22/1414 (2%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
||||| ||||| || |||||||| ||||| | |||||||| || |||||||| || ||
Sbjct 5902 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATTTGGGGCACA 5843
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | | |||||||| || ||| || | ||| | ||||| ||| || || ||
Sbjct 5842 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 5783
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436
|| | || |||||||| | | ||| | || | ||||| | || || |||||||
Sbjct 5782 GTCATGGCTCTCTCACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAAT 5725
Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495
| || || || |||| ||| || ||||| |||||||| | | || |
Sbjct 5724 AGGTAGTGAAGG-TCTGAGTTTGCTTGGTGGGAATAGTTGTGTTGCGCTTGATTAAGGCA 5666
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | |||||| || || || | ||| |||||||| || | ||||||| || |
Sbjct 5665 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGG 5606
Query 517556 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614
| | ||| | ||||| | | || | ||| | |||||||| || || | |||||||||
Sbjct 5605 AGGTCTTGCACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACC 5547
Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 517673
|||||| ||||||||||| ||||| | ||| ||||| | ||| ||||| || || |
Sbjct 5546 ATATGCTACAGCTTCATCGGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 5487
Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733
||| | || || | | ||| |||||||||| ||| || ||||| | ||||||||||
Sbjct 5486 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 5428
Query 517734 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793
| |||| ||| || || || | ||| | | | || || || |||||||||
Sbjct 5427 TAATCTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 5368
Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853
| | || | || | | || || || || ||| | |||| | || |||
Sbjct 5367 CACGGAAGAGATCAGCATTGAGCTCCTCAAAACGAGCACGGGTAATGGATGTATAGAAAT 5308
Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913
|||| || || || || || |||| ||||| | || || || || || || | ||
Sbjct 5307 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAGCTCAGGGTAC 5248
Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971
|||| || | ||||| ||||| | || | ||| | || | ||| ||| | |
Sbjct 5247 GTTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 5190
Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 518031
|| |||| || | |||||| ||||| ||| | | || | ||||| |||||
Sbjct 5189 GTCACGCTTATGCTTGCGCTTGAATTCTTCCACAAAGTGACTCACCATGCGATTGTCAAA 5130
Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091
|| || || ||||| | |||| ||| | |||| | | |||| || | ||||||||
Sbjct 5129 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 5070
Query 518092 AAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 518151
|| | ||||| | |||||| || |||||||||| ||||| || || || ||| |
Sbjct 5069 AATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACGTTCTT 5010
Query 518152 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205
| || || |||||||| | |||||| |||| ||||| || || || ||
Sbjct 5009 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCGGCCGTGGGCTC 4950
Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265
|||||| || | ||| || || ||||| | ||| | ||||||||||| |||||||| |
Sbjct 4949 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCG 4890
Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAA 518324
||| || || || || |||||||| |||||||| || ||| || | |||| ||| |
Sbjct 4889 TTGGGAGTCATTGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCA 4831
Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384
||||| || ||| |||||||| | || | ||| || ||||||| ||| ||
Sbjct 4830 AGTAAGCCTCGGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 4771
Query 518385 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444
| | | |||| ||| | || |||| | | || || | | || | |
Sbjct 4770 AGAAATTCTTGTTCTCACCCTTGTACTCGACTTGCACCTTGGGCTTCCCAGCTTCACTCA 4711
Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504
|| || ||||||| ||||||||| || || || | |||||| ||| | | |
Sbjct 4710 CCACACGGAAAGGCCAGTGTTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGC 4651
Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564
| || | || || ||||| || || || ||| | ||||| || || |||||| ||||
Sbjct 4650 CGATGAGACGCTTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGG 4591
Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624
|||||||||| || || |||| || || ||||| | |||||| || || ||||| |
Sbjct 4590 CTGCATCTCCGATGAGGCGTTCAGTGTCCGTAAAGGCAACATAACTCGGTGTAGTGCGGT 4531
Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACC 518658
| ||||| || || || ||||| || ||||| ||
Sbjct 4530 TGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 4497
>seq253197
Length=8662
Score = 96.9 bits (106), Expect = 3e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497
|| || || || ||||||||||| |||||||||||||| ||| | ||| | ||||| |||
Sbjct 2431 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 2372
Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557
||| | || || || | |||||||| || ||||| ||||||||||| | |||||
Sbjct 2371 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTCTTAATGTA 2312
Query 635558 AGGGATGC 635565
|||| ||
Sbjct 2311 CGGGAAGC 2304
>seq244066
Length=8106
Score = 91.5 bits (100), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 9/206 (4%)
Strand=Plus/Minus
Query 1047664 AAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGAAATA 1047723
||||| || || || || || || || | | ||||| |||||||||||||| |
Sbjct 6965 AAATTCACTGGCAATTTCTTCTACGACTTCATGATGGGAATTGAATTTAATCC---ACGC 6909
Query 1047724 TTTGGAAC------TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGG 1047777
|| |||| |||||| ||| ||||||||||||| |||| |||||| | | |||
Sbjct 6908 TTGGGAAAGTGGTTTGATTTCAAATTGTTTTTTAATGGCCGACCTGGAATTGTAGGCTGG 6849
Query 1047778 AATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAAT 1047837
| |||||||||||| || | ||| |||||| | ||| | |||| | || |||||
Sbjct 6848 ACTTTGATTAATTTATCCTATGCTGCAAAACAACAGGAATTATATGGACAAGTCACTAAT 6789
Query 1047838 TCAATGATTCTTGTTATTATTTTACA 1047863
|| ||| | ||| | | ||| ||||
Sbjct 6788 TCTATGCTGCTTCTCAATATCCTACA 6763
>seq308505
Length=989
Score = 89.7 bits (98), Expect = 4e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | || || |||| ||||| || ||||| ||||| ||||||| | ||
Sbjct 48 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTGATAATTCGGAGCACG 107
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || ||||| | || || || || |||||
Sbjct 108 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAATAA 167
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| ||||| || | || ||||
Sbjct 168 GCTGGAACTGTGACCACAGCAT 189
>seq296815
Length=8957
Score = 89.7 bits (98), Expect = 4e-12
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 366995 TAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTC 367054
|||| || || ||||| ||||| ||||| ||||||||| | || || | ||||| |
Sbjct 2275 TAGTCGCTACTATAGCCTTTGGAATGGGCATTAATAAAGCAGACATTCGGACAGTTATAC 2334
Query 367055 ATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTG 367114
|||||||||| || ||| | || ||| || || || |||||||| || || |||||||
Sbjct 2335 ATTATGGAGCCCCAAAGGAAATGGAATCATACTACCAGGAAATTGGAAGGGCTGGTCGTG 2394
Query 367115 ATGG 367118
||||
Sbjct 2395 ATGG 2398
>seq657547
Length=275
Score = 87.8 bits (96), Expect = 1e-11
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | |
Sbjct 113 TGTACGTTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTGGGT 54
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTT 635548
||||||||||||||| ||||| || || ||||| || |||||| ||
Sbjct 53 GTTATTGGAAGAGATAGATATGGGGTATTTCCACTCAGGGGAAAAATT 6
>seq88391
Length=12687
Score = 87.8 bits (96), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213
||||||||| ||||| | ||||| || | || ||||| ||||| ||||||||||
Sbjct 1296 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 1237
Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
|||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 1236 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 1191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3736959377967520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |