Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7881 374 6e-98 seq253197 96.9 3e-14 seq244066 91.5 1e-12 seq308505 89.7 4e-12 seq296815 89.7 4e-12 seq657547 87.8 1e-11 seq88391 87.8 1e-11 >seq7881 Length=13965 Score = 374 bits (414), Expect = 6e-98 Identities = 941/1414 (67%), Gaps = 22/1414 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||||| ||||| || |||||||| ||||| | |||||||| || |||||||| || || Sbjct 5902 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATTTGGGGCACA 5843 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | |||||||| || ||| || | ||| | ||||| ||| || || || Sbjct 5842 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 5783 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | || |||||||| | | ||| | || | ||||| | || || ||||||| Sbjct 5782 GTCATGGCTCTCTCACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAAT 5725 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| || ||||| |||||||| | | || | Sbjct 5724 AGGTAGTGAAGG-TCTGAGTTTGCTTGGTGGGAATAGTTGTGTTGCGCTTGATTAAGGCA 5666 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || || || | ||| |||||||| || | ||||||| || | Sbjct 5665 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGG 5606 Query 517556 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | ||| | ||||| | | || | ||| | |||||||| || || | ||||||||| Sbjct 5605 AGGTCTTGCACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACC 5547 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 517673 |||||| ||||||||||| ||||| | ||| ||||| | ||| ||||| || || | Sbjct 5546 ATATGCTACAGCTTCATCGGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 5487 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||| | || || | | ||| |||||||||| ||| || ||||| | |||||||||| Sbjct 5486 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 5428 Query 517734 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | |||| ||| || || || | ||| | | | || || || ||||||||| Sbjct 5427 TAATCTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 5368 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 | | || | || | | || || || || ||| | |||| | || ||| Sbjct 5367 CACGGAAGAGATCAGCATTGAGCTCCTCAAAACGAGCACGGGTAATGGATGTATAGAAAT 5308 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 |||| || || || || || |||| ||||| | || || || || || || | || Sbjct 5307 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAGCTCAGGGTAC 5248 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971 |||| || | ||||| ||||| | || | ||| | || | ||| ||| | | Sbjct 5247 GTTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 5190 Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 518031 || |||| || | |||||| ||||| ||| | | || | ||||| ||||| Sbjct 5189 GTCACGCTTATGCTTGCGCTTGAATTCTTCCACAAAGTGACTCACCATGCGATTGTCAAA 5130 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091 || || || ||||| | |||| ||| | |||| | | |||| || | |||||||| Sbjct 5129 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 5070 Query 518092 AAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 518151 || | ||||| | |||||| || |||||||||| ||||| || || || ||| | Sbjct 5069 AATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACGTTCTT 5010 Query 518152 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 | || || |||||||| | |||||| |||| ||||| || || || || Sbjct 5009 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCGGCCGTGGGCTC 4950 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 |||||| || | ||| || || ||||| | ||| | ||||||||||| |||||||| | Sbjct 4949 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCG 4890 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTACCAA 518324 ||| || || || || |||||||| |||||||| || ||| || | |||| ||| | Sbjct 4889 TTGGGAGTCATTGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCA 4831 Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 ||||| || ||| |||||||| | || | ||| || ||||||| ||| || Sbjct 4830 AGTAAGCCTCGGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 4771 Query 518385 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | | | |||| ||| | || |||| | | || || | | || | | Sbjct 4770 AGAAATTCTTGTTCTCACCCTTGTACTCGACTTGCACCTTGGGCTTCCCAGCTTCACTCA 4711 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 || || ||||||| ||||||||| || || || | |||||| ||| | | | Sbjct 4710 CCACACGGAAAGGCCAGTGTTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGC 4651 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | || || ||||| || || || ||| | ||||| || || |||||| |||| Sbjct 4650 CGATGAGACGCTTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGG 4591 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 |||||||||| || || |||| || || ||||| | |||||| || || ||||| | Sbjct 4590 CTGCATCTCCGATGAGGCGTTCAGTGTCCGTAAAGGCAACATAACTCGGTGTAGTGCGGT 4531 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACC 518658 | ||||| || || || ||||| || ||||| || Sbjct 4530 TGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 4497 >seq253197 Length=8662 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||| ||| Sbjct 2431 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 2372 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 ||| | || || || | |||||||| || ||||| ||||||||||| | ||||| Sbjct 2371 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTCTTAATGTA 2312 Query 635558 AGGGATGC 635565 |||| || Sbjct 2311 CGGGAAGC 2304 >seq244066 Length=8106 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 9/206 (4%) Strand=Plus/Minus Query 1047664 AAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGAAATA 1047723 ||||| || || || || || || || | | ||||| |||||||||||||| | Sbjct 6965 AAATTCACTGGCAATTTCTTCTACGACTTCATGATGGGAATTGAATTTAATCC---ACGC 6909 Query 1047724 TTTGGAAC------TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGG 1047777 || |||| |||||| ||| ||||||||||||| |||| |||||| | | ||| Sbjct 6908 TTGGGAAAGTGGTTTGATTTCAAATTGTTTTTTAATGGCCGACCTGGAATTGTAGGCTGG 6849 Query 1047778 AATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAAT 1047837 | |||||||||||| || | ||| |||||| | ||| | |||| | || ||||| Sbjct 6848 ACTTTGATTAATTTATCCTATGCTGCAAAACAACAGGAATTATATGGACAAGTCACTAAT 6789 Query 1047838 TCAATGATTCTTGTTATTATTTTACA 1047863 || ||| | ||| | | ||| |||| Sbjct 6788 TCTATGCTGCTTCTCAATATCCTACA 6763 >seq308505 Length=989 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| ||||| || ||||| ||||| ||||||| | || Sbjct 48 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTGATAATTCGGAGCACG 107 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || ||||| | || || || || ||||| Sbjct 108 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAATAA 167 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || ||||| || | || |||| Sbjct 168 GCTGGAACTGTGACCACAGCAT 189 >seq296815 Length=8957 Score = 89.7 bits (98), Expect = 4e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 366995 TAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTC 367054 |||| || || ||||| ||||| ||||| ||||||||| | || || | ||||| | Sbjct 2275 TAGTCGCTACTATAGCCTTTGGAATGGGCATTAATAAAGCAGACATTCGGACAGTTATAC 2334 Query 367055 ATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTG 367114 |||||||||| || ||| | || ||| || || || |||||||| || || ||||||| Sbjct 2335 ATTATGGAGCCCCAAAGGAAATGGAATCATACTACCAGGAAATTGGAAGGGCTGGTCGTG 2394 Query 367115 ATGG 367118 |||| Sbjct 2395 ATGG 2398 >seq657547 Length=275 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| ||||||| || ||||||||||| || ||| | || ||| | |||||| | | Sbjct 113 TGTACGTTAATTTTAACTGAGGGAGATTCTGCCAAATCTTTAGCTGTCTCTGGTTTGGGT 54 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTT 635548 ||||||||||||||| ||||| || || ||||| || |||||| || Sbjct 53 GTTATTGGAAGAGATAGATATGGGGTATTTCCACTCAGGGGAAAAATT 6 >seq88391 Length=12687 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 1296 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 1237 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 1236 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 1191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736959377967520