Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq24600 147 5e-30
seq311453 136 9e-27
seq433667 104 5e-17
seq99924 100 6e-16
>seq24600
Length=2898
Score = 147 bits (162), Expect = 5e-30
Identities = 157/206 (76%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || |||||||| || || || ||||| || | ||| || | || ||||| ||||||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || | |||||||| |||||||||||||||||||| || |||||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCT 195114
||| || |||||||||||||| |||| ||||| || ||||||| ||||| ||
Sbjct 122 GCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCA 178
Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || | |||||
Sbjct 179 GTCAAGGTCTTCACAAAGATCTGCAT 204
Score = 127 bits (140), Expect = 4e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || || ||||| || | || || | ||||||||
Sbjct 457 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 516
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||| || || ||||| | | || || || |||||||||||||| ||||| ||
Sbjct 517 AATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 576
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108
||||| ||| || |||||||||||||| |||| ||||| || ||||||| |||
Sbjct 577 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAGGGTAATGGTC 633
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || || || || | |||||
Sbjct 634 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/125 (76%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078
|| || || |||||||||||||| ||||| || ||||| ||| || ||||||||||||
Sbjct 316 TGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTG 375
Query 195079 TCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135
|| |||| ||||| || ||||||| ||||| || ||||| || || || || |
Sbjct 376 TC---ACTTGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGATC 432
Query 195136 TGCAT 195140
|||||
Sbjct 433 TGCAT 437
>seq311453
Length=2514
Score = 136 bits (150), Expect = 9e-27
Identities = 158/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| || | || || | || |||||
Sbjct 182 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 241
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| || | || ||||| |||||||||||||||||||| ||
Sbjct 242 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGG 301
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| || ||||||||||| ||| |||||| || ||||| | ||
Sbjct 302 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTT 358
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| ||||| || || || || | |||||
Sbjct 359 TTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 111 bits (122), Expect = 3e-19
Identities = 122/161 (76%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||| || || || ||||| || | || ||||| ||||||||||||||
Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099
||||| || || || ||||||||| ||||||||||| ||| ||||| |||||
Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCAAGT 121
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | || ||||| ||||| || || || || | ||||||
Sbjct 122 GTTATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq433667
Length=2244
Score = 104 bits (114), Expect = 5e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | || || | ||||||||
Sbjct 147 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCC 88
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| || | || || || |||||||||||||| ||||| ||
Sbjct 87 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 28
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTG 195078
|| || |||||| ||||| ||||||
Sbjct 27 ATCTTGGCCTTGACATTCTCGATGGTG 1
>seq99924
Length=25621
Score = 100 bits (110), Expect = 6e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
||||| || || ||||| || | ||| || | |||||| | |||||||| || || |||
Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| || | |||||||| | |||||||||||| ||||| || ||||| ||| || |||
Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987
Query 195070 TCAATGGT 195077
||||||||
Sbjct 22986 TCAATGGT 22979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1096916471246640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |