Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq24600 147 5e-30 seq311453 136 9e-27 seq433667 104 5e-17 seq99924 100 6e-16 >seq24600 Length=2898 Score = 147 bits (162), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| || | ||| || | || ||||| |||||| Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || | |||||||| |||||||||||||||||||| || ||||| Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || |||||||||||||| |||| ||||| || ||||||| ||||| || Sbjct 122 GCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCA 178 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| Sbjct 179 GTCAAGGTCTTCACAAAGATCTGCAT 204 Score = 127 bits (140), Expect = 4e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | |||||||| Sbjct 457 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 516 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || ||||| | | || || || |||||||||||||| ||||| || Sbjct 517 AATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 576 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||||||||| |||| ||||| || ||||||| ||| Sbjct 577 ATTTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAGGGTAATGGTC 633 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 634 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || || || |||||||||||||| ||||| || ||||| ||| || |||||||||||| Sbjct 316 TGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTG 375 Query 195079 TCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || |||| ||||| || ||||||| ||||| || ||||| || || || || | Sbjct 376 TC---ACTTGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGATC 432 Query 195136 TGCAT 195140 ||||| Sbjct 433 TGCAT 437 >seq311453 Length=2514 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | || ||||| Sbjct 182 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 241 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| |||||||||||||||||||| || Sbjct 242 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGG 301 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| |||||| || ||||| | || Sbjct 302 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTT 358 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || || || || | ||||| Sbjct 359 TTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390 Score = 111 bits (122), Expect = 3e-19 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || ||||| || | || ||||| |||||||||||||| Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 ||||| || || || ||||||||| ||||||||||| ||| ||||| ||||| Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCCACCTCAAGT 121 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| ||||| || || || || | |||||| Sbjct 122 GTTATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162 >seq433667 Length=2244 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 147 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCC 88 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 87 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 28 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTG 195078 || || |||||| ||||| |||||| Sbjct 27 ATCTTGGCCTTGACATTCTCGATGGTG 1 >seq99924 Length=25621 Score = 100 bits (110), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| || || ||||| || | ||| || | |||||| | |||||||| || || ||| Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || || | |||||||| | |||||||||||| ||||| || ||||| ||| || ||| Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987 Query 195070 TCAATGGT 195077 |||||||| Sbjct 22986 TCAATGGT 22979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1096916471246640