Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 98.7 6e-16
seq24600 82.4 5e-11
>seq311453
Length=2514
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 164 CCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 223
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || | || ||||||||||| || ||||| || || | |||||||| | ||
Sbjct 224 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 283
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || || ||||| ||||| ||||| | | || | |||| || || ||
Sbjct 284 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 343
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | ||| ||||||||||| || | ||||| ||||||||||||||
Sbjct 344 TCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 91.5 bits (100), Expect = 9e-14
Identities = 140/198 (71%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || || ||||| ||||| || || | || |||| |||| || || || |||||
Sbjct 427 TTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAA 486
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || | |||||||| | || | || |||||||| ||||| ||||| |
Sbjct 487 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--A 544
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | |||| || ||| || || | ||| |||||||| || || | ||||||
Sbjct 545 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTC 604
Query 34968 ACAAAGATCTGCATATTC 34985
|||||||||||||| |||
Sbjct 605 ACAAAGATCTGCATTTTC 622
Score = 89.7 bits (98), Expect = 3e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884
|||| ||||||||||| || ||||| || || | |||||||| | || | || ||||
Sbjct 6 CATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCT 65
Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944
|||| ||||| |||||| | | || | |||| || ||| || || | ||||
Sbjct 66 TGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTA 125
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||||||| || | ||||| |||||||| |||||
Sbjct 126 TGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq24600
Length=2898
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| | || | || |||||||| ||||| |||||
Sbjct 14 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAG 73
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | || ||||| | || | || || ||||| || || || || ||
Sbjct 74 ATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCAC--AT 131
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | ||| || || | ||| ||||| || || || | |||||||
Sbjct 132 TCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAGGTCTTCA 191
Query 34969 CAAAGATCTGCAT 34981
|||||||||||||
Sbjct 192 CAAAGATCTGCAT 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321136395269760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |