Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq236318 114 1e-20 seq835901 84.2 2e-11 >seq236318 Length=20466 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | |||||||| || |||| ||| | Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131 Query 19103 CAACTA 19108 | |||| Sbjct 6130 CTACTA 6125 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || || || ||| || || || ||| || ||||| Sbjct 7753 TTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAG--GACTTGACATCACACCCATC 7696 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | |||||||||||||||||| || || || | || ||| Sbjct 7695 CTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTC 7636 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 7635 TCCATAAAGTCAAATGGATT 7616 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||| || | |||||| |||||||||||||||||||| || || || Sbjct 4407 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGC 4348 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||| ||| Sbjct 4347 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTC 4303 >seq835901 Length=673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| || ||||| |||||||||| || | || ||||| |||||||||||| | Sbjct 176 ACCTCTTCTACCGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 235 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTCC 19575 ||||| || ||||| || ||||||| || ||| ||| ||||| | ||||||| Sbjct 236 TATTGGATTGGAAAGATGACAAATCGATGGGGATTCTTCCTTAAG-AGAGGTTCC 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555898059868800