Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 114 1e-20
seq835901 84.2 2e-11
>seq236318
Length=20466
Score = 114 bits (126), Expect = 1e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| |||| ||||||||||| || | |||||||| || |||| ||| |
Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131
Query 19103 CAACTA 19108
| ||||
Sbjct 6130 CTACTA 6125
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/140 (75%), Gaps = 4/140 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| ||||| ||||||||| || || || ||| || || || ||| || |||||
Sbjct 7753 TTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGCAG--GACTTGACATCACACCCATC 7696
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|||||||||| | || | |||||||||||||||||| || || || | || |||
Sbjct 7695 CTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATTC 7636
Query 18730 TCCATAAAATCAAATGGATT 18749
|||||||| |||||||||||
Sbjct 7635 TCCATAAAGTCAAATGGATT 7616
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
||| |||| || | ||| || | |||||| |||||||||||||||||||| || || ||
Sbjct 4407 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGC 4348
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||| || || || ||||| | ||||||||| | |||| |||
Sbjct 4347 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTATTTC 4303
>seq835901
Length=673
Score = 84.2 bits (92), Expect = 2e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| ||||| || ||||| |||||||||| || | || ||||| |||||||||||| |
Sbjct 176 ACCTCTTCTACCGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 235
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTCC 19575
||||| || ||||| || ||||||| || ||| ||| ||||| | |||||||
Sbjct 236 TATTGGATTGGAAAGATGACAAATCGATGGGGATTCTTCCTTAAG-AGAGGTTCC 289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555898059868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |