Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7881 154 1e-31 seq308505 104 2e-16 seq24600 91.5 1e-12 >seq7881 Length=13965 Score = 154 bits (170), Expect = 1e-31 Identities = 549/844 (65%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| || | ||||| ||||||| | || | ||||| || || Sbjct 5070 GAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCACTTGGGTGGGGAGGAC 5129 Query 551817 TTTGATAATAGACTGGTA--TCATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||| ||| | |||| ||| |||| ||||| || || || || | || || Sbjct 5130 TTTGACAATCGCATGGTGAGTCACTTTGTG--GAAGAATTCAAGCGCAAGCATAAGCGTG 5187 Query 551875 ATCTATCTA-CATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAA 551933 | | || || | | | || |||| || || | || || || || ||||||||| Sbjct 5188 ACATTGCTGGCAACAAGCGA-GCAGTTCGACGGCTCCGCACAGCCTGTGAGAGAGCCAAA 5246 Query 551934 CGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATT 551993 || | || || || || | ||||||| | || ||||||||||| || ||| Sbjct 5247 CGTACCCTGAGCTCCTCCACCCAGGCTTCTATTGAGATTGACTCATTATTTGATGGCATT 5306 Query 551994 GATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGA 552053 |||| |||| | ||| | | || ||||| || | | |||||||||| | Sbjct 5307 GATTTCTATACATCCATTACCCGTGCTCGTTTTGAGGAGCTCAATGCTGATCTCTTCCGT 5366 Query 552054 AAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA-TCCAAAGT 552112 || ||||||| || || | | | | | ||| | ||| | || ||| || | | Sbjct 5367 GGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAGATT 5426 Query 552113 ACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--- 552169 | |||||||||| || |||||||| || || | ||||| || || | ||| ||| Sbjct 5427 A-ATGAAATTGTTCTGGTTGGTGGCTCAACTCGTATTCCCAAGAT---CCAAAAGTTGCT 5482 Query 552170 --AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTT 552227 ||| ||| ||| ||||| ||| | |||| |||| | ||||| ||||| ||||| Sbjct 5483 CCAAG-ACTTCTTT-AATGGAAAAGAGCTAAACAAAAGCATAAATCCCGATGAAGCTGTA 5540 Query 552228 GCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGACAAACTGATGAAAAACTAC 552285 || |||||||| || | || || |||||||| | |||||| | | ||||| | | Sbjct 5541 GCATATGGTGCTGCTGTGCAGGCTGCTATTCTGATGGGTGACAAA-TCA-GAAAATGTGC 5598 Query 552286 AAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345 || | | | || | ||||| | || || ||||| ||| | || || | ||| ||| Sbjct 5599 AAGACCTCCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTG 5658 Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405 | |||||| | ||| | | || || |||||||| || || ||| || Sbjct 5659 TGATGACTGCCTTAATCAAGCGCAACACAACTATTCCCACCAAGCAAACTCAGACCTTCA 5718 Query 552406 CTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAAT 552465 |||| |||||||| || || | | ||| | ||| | | ||| || || ||| Sbjct 5719 CTACCTATTCAGACAACCAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCA 5778 Query 552466 TCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTC 552525 | || || || || |||| || || | ||| | | ||||||||| ||||| |||| Sbjct 5779 TGACCAAGGACAACAATCTGCTGGGCAAGTTTGACCTGACAGGTATTCCACCTGCACCTC 5838 Query 552526 GTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGA 552585 |||| || || |||||||| || || || || || ||||| ||||| || | ||||| | Sbjct 5839 GTGGTGTGCCCCAAATTGAGGTGACATTTGACATAGATGCAAATGGTATCCTCAATGTTA 5898 Query 552586 CTGC 552589 |||| Sbjct 5899 CTGC 5902 >seq308505 Length=989 Score = 104 bits (114), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| ||||| |||||||| || || |||||||| Sbjct 196 GTTACAAATGCTGTGGTCACAGTTCCAGCTTATTTCAATGACTCCCAGCGCCAAGCTACA 137 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| |||||||| || || || || || ||||||||||| || || || Sbjct 136 AAAGATGCCGGAACCATTGCTGGTCTCAACGTGCTCCGAATTATCAATGAGCCAACCGCA 77 Query 550511 GCTGCACTTGCATATGGACTTG 550532 ||||| |||| || || |||| Sbjct 76 GCTGCGATTGCTTACGG-CTTG 56 >seq24600 Length=2898 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||| ||||| ||| | ||| || ||||| |||| || Sbjct 444 CCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGG 501 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| | ||| || |||||||| || | || ||||||||||||||||| Sbjct 502 GTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATG 561 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| || || || ||||| || || |||||| || ||| | || | || || Sbjct 562 CCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACT-TGGCTCCACCTC 620 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| || || ||||| | || || || || || ||||| Sbjct 621 CAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3982550323920800