Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq236318 147 3e-30 seq15708 107 2e-18 >seq236318 Length=20466 Score = 147 bits (162), Expect = 3e-30 Identities = 110/129 (85%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||||||||| || | ||| ||||||| ||||| ||| || Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 6128 ACTACACGT 6120 Score = 100 bits (110), Expect = 3e-16 Identities = 108/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 36826 TTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCAT 36883 |||| |||||| |||| || || ||| |||| | | | ||| ||| || ||||| Sbjct 7754 TTTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGC--AGGACTTGACATCACACCCAT 7697 Query 36884 TTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 ||||||||||||| || ||| |||| || ||||| ||||| ||||| || || ||||| Sbjct 7696 CCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATT 7637 Query 36944 TTCCATAAAATCAAATGGATT 36964 |||||||| ||||||||||| Sbjct 7636 CTCCATAAAGTCAAATGGATT 7616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | || ||||||||||| ||||||||||||||||| || |||||||| Sbjct 4416 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATT 4357 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 4356 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 4318 >seq15708 Length=5494 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||| || || || || | ||||||||||| ||||| || | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| |||||||||| ||||||||||| || ||||| || || ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 37318 CTAC 37321 | || Sbjct 5311 CAAC 5308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585772291676800