Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1547 134 3e-26 seq133452 122 2e-22 seq39449 120 6e-22 seq221793 118 2e-21 seq321951 100 5e-16 seq200382 95.1 2e-14 >seq1547 Length=24848 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || || | ||| || || || || |||||||| | Sbjct 6279 GCTGGCAGCCGTTGTTCACGTGGTTCATTACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 6220 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || || ||||| ||||| || ||| | |||||| || | Sbjct 6219 GGAGCGCGCTGGCAGTGTTAGATAGTCCCGCGTTCTCGTTCTTTAAGCTCTTCACCTTGT 6160 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | |||||||||||| |||| ||||| Sbjct 6159 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCTGCATTTGGTGGCGGCCAGGCGGT 6100 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | || | ||| |||||||||| |||||||| ||||||| || |||||| Sbjct 6099 TGCGAAGCCGTTTCCTCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTAATGGGAGAC 6041 >seq133452 Length=4818 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||| |||| || |||||||||||||| | |||||| || | ||| |||| |||| | Sbjct 569 CCTCTGCTGACCGGGCTGCCCTGGTAGGTCTCGTAGGGCCCGTCTTCCCTGGCGAGCTGG 510 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| |||||||||||| || || |||| | ||||||| || | Sbjct 509 CAGCTGGCCTCCAGGGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGCAGCTGG 450 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | |||||| | | ||||| | ||| | || ||||| ||||| ||| Sbjct 449 GCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACC 390 Query 213321 CCGATGCCGATGGGTCTGTG 213340 || ||||| ||||| | ||| Sbjct 389 CCAATGCCAATGGGGCGGTG 370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || ||||| || | | ||| | ||| ||||||||||| | Sbjct 1724 TACCTGGAACTCCCCCGAGAGAACACGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCAC 1665 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||| |||||||||| |||||| || ||| ||||||||||| || ||||||||||| Sbjct 1664 GGACTCATTGTTCCCCAAAATCTGAGCCGTGGAAGCTGTGGGCATCGGGGCCACCAGGAG 1605 Query 213035 ACTGTTCCTCACTCC 213049 || ||||| || || Sbjct 1604 GCTATTCCTGACCCC 1590 >seq39449 Length=2664 Score = 120 bits (132), Expect = 6e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 1370 GTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 1429 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||| | ||| ||||| ||| Sbjct 1430 TTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGA 1489 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| ||||| Sbjct 1490 GACTCAATGATGGCGTACCAGAGCTGCTGGGCCTTCACCAC 1530 >seq221793 Length=6123 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| ||||| || | | || || || |||| Sbjct 6001 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGGAGGAGGTTGGCCGTCGAGGCCAGT 5942 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| ||||| || ||||| || | |||||| ||||| Sbjct 5941 TCGGTGTTCTGGTTCTTGAGGCTCTTGACTTTTTCTTCCAGGCGGGAGATGCGCTCCAGC 5882 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 5881 TTCCGCCGCCGACACTTGGAGGCCGCGATGCGGTTGCGCAGCCGCTTGCGCTCTGCCTTG 5822 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 5821 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 5789 >seq321951 Length=5427 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| |||||||||| ||| |||||| || ||||||| | |||| ||| ||| Sbjct 582 CATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 641 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || || || ||||| ||||||||||| |||||| ||||||| ||| Sbjct 642 CCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGCTCCAGGTA 701 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||| ||||| || || |||| Sbjct 702 GATGGCGAAGGCCCCGGGTCTCT 724 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 214185 CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATA 214244 || |||||||| || | | | ||| | |||||| || |||||| |||||| | | Sbjct 3071 CTGGAGAGCTGAGGGCGGTTGGTGCCGGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAC 3130 Query 214245 AACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATC 214304 |||| | ||| ||||| |||||||||| | | | | |||||||| |||||||||| Sbjct 3131 CACTTCTCAGACAGGAGGTTGTAGGTCTCAATGGCCGCCTCGATGTCGTTCTTGTGGATC 3190 Query 214305 TGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTC 214342 | | | ||||||||||||||||||||| | ||| Sbjct 3191 CCCACCGAGACCCTCATCAGCATGTGCTGGGGACGCTC 3228 >seq200382 Length=20480 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 5881 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCAC 5822 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGG 241606 |||| || || | ||||| || ||||| || || || || || | ||| || ||| Sbjct 5821 TTGGAAGCCGCGATCCGGTTGCGCAGTCTTTTGCGCTCGGCTTTCAGGCGCTCTTGG 5765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921240294092800