Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq321951 120 6e-22
seq39449 96.9 6e-15
seq15708 87.8 3e-12
>seq321951
Length=5427
Score = 120 bits (132), Expect = 6e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091
|||| | ||||||||||||||||||||| ||||| | ||| || || | | || ||||
Sbjct 574 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGC 633
Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151
|||||| ||| |||| ||| ||| || | ||||||||| |||||| |||||| |||
Sbjct 634 TCCTCCTTCCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGC 693
Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
||||| |||| ||| | || ||||||| ||
Sbjct 694 TCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 724
>seq39449
Length=2664
Score = 96.9 bits (106), Expect = 6e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789
||||||| || ||| |||| |||| | ||||| || ||||||||||||||||||||||
Sbjct 1353 CCACCTCATCATTGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1412
Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849
| ||||||| | || || ||| || ||| | ||||||||||||||| ||||
Sbjct 1413 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTG 1472
Query 221850 CGCCAGTCTCCAGCTGAG 221867
|| |||||| |||||
Sbjct 1473 TCCCCGTCTCCGTCTGAG 1490
>seq15708
Length=5494
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| || ||||||||||| || |||||||| || ||| | ||||| ||||| || |
Sbjct 5306 TGGTTGCGTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGTGCTTTTGCAGCCATATTTT 5365
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001
|||||||| ||| ||| ||||| || || |||||| |||||||| || || |||||
Sbjct 5366 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCT-TACTTTCTCCAACGAACTTATTAGCAGA 5424
Query 26002 GACGA 26006
|| ||
Sbjct 5425 GATGA 5429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918581993804800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |