Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq321951 120 6e-22 seq39449 96.9 6e-15 seq15708 87.8 3e-12 >seq321951 Length=5427 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||||||||||||||| ||||| | ||| || || | | || |||| Sbjct 574 ACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGC 633 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| |||| ||| ||| || | ||||||||| |||||| |||||| ||| Sbjct 634 TCCTCCTTCCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGC 693 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| ||| | || ||||||| || Sbjct 694 TCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 724 >seq39449 Length=2664 Score = 96.9 bits (106), Expect = 6e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || ||| |||| |||| | ||||| || |||||||||||||||||||||| Sbjct 1353 CCACCTCATCATTGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 1412 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| || ||| | ||||||||||||||| |||| Sbjct 1413 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTG 1472 Query 221850 CGCCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 1473 TCCCCGTCTCCGTCTGAG 1490 >seq15708 Length=5494 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||||||||| || |||||||| || ||| | ||||| ||||| || | Sbjct 5306 TGGTTGCGTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGTGCTTTTGCAGCCATATTTT 5365 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||||||| ||| ||| ||||| || || |||||| |||||||| || || ||||| Sbjct 5366 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCT-TACTTTCTCCAACGAACTTATTAGCAGA 5424 Query 26002 GACGA 26006 || || Sbjct 5425 GATGA 5429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918581993804800