Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7881 188 5e-42 seq244066 102 5e-16 seq311453 86.0 4e-11 seq36342 86.0 4e-11 >seq7881 Length=13965 Score = 188 bits (208), Expect = 5e-42 Identities = 385/558 (69%), Gaps = 18/558 (3%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || || || || || || || ||| || || | |||| || | || || Sbjct 4442 TGCCATAGGCATCGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAA 4501 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || ||||| |||||| | ||||| Sbjct 4502 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGTTATGTTGCCTTTAC 4561 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || || |||||||| || || |||||| || ||||| || Sbjct 4562 GGACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAA 4621 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || || || ||||| || | | || || || || |||||||| | || || || || Sbjct 4622 CACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAATTTGATGACCCTACGGTGCAGTC 4681 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | || | ||| || || | | ||| Sbjct 4682 CGATATGAAACACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTGCAAGT 4741 Query 474628 --AATACACGCAGGTGA-AACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||| | ||||| ||| || ||||| | || ||| ||||||| || ||||| | Sbjct 4742 CGAGTACAAG--GGTGAGAAC--AAGAATTTCTTTCCTGAAGAAATTTCCTCTATGGTAT 4797 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA---CAAGAAGTAACTGA-TGC 474738 | |||||||||| ||| || ||| | || ||||| ||| ||| | || ||| Sbjct 4798 TGACCAAAATGAAGGAAATAGCCGAGG-CTTA-CTTGGGTTGCAA--AGTC-CAGAGTGC 4852 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||||||||||| || ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 4853 TGTAATTACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCAGG 4912 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||| ||||||| || || || || || |||||||| || || || || || |||| Sbjct 4913 TACCATTACAGGTCTCAACGTATTGCGCATCATTAATGAGCCCACGGCCGCTGCCATTGC 4972 Query 474859 TTATGGTCTTGATAAGAA 474876 |||||| | ||||| || Sbjct 4973 CTATGGTTTGGATAAAAA 4990 Score = 170 bits (188), Expect = 1e-36 Identities = 421/635 (66%), Gaps = 8/635 (1%) Strand=Plus/Plus Query 475542 CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGG 475601 || || |||| |||| || | ||||| || ||||||| |||| ||||| | | Sbjct 5272 CTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTATACATCCATTACCCGTG 5331 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 || ||||| || | | |||||||||| | || ||||||| || || | | Sbjct 5332 CTCGTTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGG 5391 Query 475662 TTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTT 475721 ||| | ||| |||| || |||||| ||| | ||||||||||||| || || || | Sbjct 5392 CTCTTCGTGATGCTAAGCTAGACAAAGGACAGATTAATGAAATTGTTCTGGTTGGTGGCT 5451 Query 475722 CAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAA 475781 |||| | ||||| || || | | |||| | | |||||||| ||| || ||| Sbjct 5452 CAACTCGTATTCCCAAGATCCAAAAGTTGCTCCAAGACTTCTTTAATGGAAAAGAGCTAA 5511 Query 475782 ATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 | |||| ||||||| ||||||||||| |||||||| |||||||| || || |||||| Sbjct 5512 ACAAAAGCATAAATCCCGATGAAGCTGTAGCATATGGTGCTGCTGTGCAGGCTGCTATTC 5571 Query 475842 TATCAGGTCAATCAGACGAGAAACTAAATAATA--TTGTACTTGTTGACGTAACTCCACT 475899 | ||| | || | ||||| | || | | | || |||| ||| | ||||| Sbjct 5572 TGATGGGTGA--CAAATCAGAAAATGTGCAAGACCTCCTGCTGCTTGATGTAGCACCACT 5629 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 ||| | ||| |||| || | ||| || | |||||| | || | | || || | Sbjct 5630 TTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAGCGCAACACAAC 5689 Query 475960 TATCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 ||| || ||| ||| ||| | || | || ||||| || || || | | ||| Sbjct 5690 TATTCCCACCAAGCAAACTCAGA--CCTTCACTACCTATTCAGACAACCAGAGTAGTGTG 5747 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 | ||| | | ||| ||||| ||| | || || || || || || || | Sbjct 5748 CTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTGCTGGGCAAG 5807 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 ||| | || ||||||||| ||||| || | || || || |||||||| || || ||| Sbjct 5808 TTTGACCTGACAGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTT 5867 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || || |||||||||||||| || ||||||||||| Sbjct 5868 GACATAGATGCAAATGGTATCCTCAATGTTACTGC 5902 >seq244066 Length=8106 Score = 102 bits (112), Expect = 5e-16 Identities = 138/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||| | ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 6777 AAGCAGCATAGAATTAGTGACTTGTCCATATAATTCCTGTTGTTTTGCAGCATAGGATAA 6836 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 6837 ATTAATCAAAGTCCAGCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 6896 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | || || || || | Sbjct 6897 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTCGTAGAAGAAAT 6952 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 6953 TGCCAGTGAATTT 6965 >seq311453 Length=2514 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||| || | || || || | ||||| | | Sbjct 401 AGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGG 460 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| | |||||| |||||||| || || | || || || ||||| || |||||| Sbjct 461 CCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCC 520 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| |||||| || || || ||| || | || ||||| Sbjct 521 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTG 580 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| | ||||| || || || || Sbjct 581 ATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 615 >seq36342 Length=4071 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| ||||| || || || ||||| |||||||| || |||||||||||||| Sbjct 2624 GGCATTCCTCCAGCTCCAAGGGGCGTCCCTCAGATTGAAGTCACCTTTGATATTGATGCC 2683 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || ||| | ||| |||||| Sbjct 2684 AATGGCATCCTCAACGTTTCGGCTGTTGATAA 2715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3230263582420160