Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq125410 194 2e-44
>seq125410
Length=11294
Score = 194 bits (214), Expect = 2e-44
Identities = 642/993 (65%), Gaps = 13/993 (1%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||| | ||| || |||||||| || | || || |||||||| || ||||
Sbjct 7075 TGTGTCGTAAATGCTCTTCCAGACACTGAATTGCAAAAGGATCAACGTCAGTATCAAATT 7016
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
| || || || | ||| || ||| ||| |||||| || |||||| || || |
Sbjct 7015 TGTTGGCAAAAAAATGATGT---TTCCGTAACATCCAGCTCAAATCTCCGACTCCAAAGA 6959
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| || || ||||| | ||| | || |||||||| ||||| |||| || || | || |
Sbjct 6958 CACATACAGAACGGACGTGAATTCCATTGCAAGGTGGGTAAGGAGCACCCTTGGATACAT 6899
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
| ||||| |||| |||||||||||||||| ||| | || | ||| || || || |
Sbjct 6898 CCCCTTCAAAGTAATGCCACTTCACAAACCGGGCAACGGCATTCATATCAGAAACATCAT 6839
Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
|||||| || | || || ||||| ||||| | || || ||||| | || |||||
Sbjct 6838 ATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGAATTGTAGCCCAT 6780
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
| || ||| || || ||||||||||| |||| |||||| || || | ||| |||
Sbjct 6779 AAGTATTCATCAGGACTGTACGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTG 6720
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | | || | || | || | || ||||| || || || || |||||
Sbjct 6719 TTCTCTAATACATATTCCACAAATTTCCTATTAACAACAAAATAGGCACTTCCAGAGAAA 6660
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
|| ||| || | ||| || | |||||| || | || ||| || |
Sbjct 6659 ATGGGTGTGTTGAGAGGTGGATGCTGTTTGTCTATCCCCATATTTTTTACCTTGCCATCA 6600
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
|| | | || | |||||||| || ||| |||| | ||||| ||| || |||
Sbjct 6599 ACTACTTCATGATGTTTCTTCCATCTCACCTCTTTGTTTGAAGGCATTTTTTCTGTTTCT 6540
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
| ||| || |||| | || | ||||| || || || || ||| | || |||||||
Sbjct 6539 AAACTATTTTCACCATTAAGGGCTTTCAACTTCTCCACAATTTCTTGATTGGTCTTGATT 6480
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
|| || || || ||||| | || |||| ||||||||| || | || || ||
Sbjct 6479 GGGAAATCCGTGCCGCAGAGATTGATCAAGTACTTCCAGCTCACATTCCTCCTGTAGAGA 6420
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
||| ||||||| || | ||| || || || |||||||| || || |||||||| | ||
Sbjct 6419 TCCTTCATGCAGTTGAGATCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTCC 6360
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCC-AG 160819
| || ||||| | ||||| || | ||||| || | || || || | ||| ||
Sbjct 6359 AATTGGCTGGCAATGAAGACATTGTGAAAACATGATGCAATCCCTTTTACTGCTGCCAAG 6300
Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879
||||| || | |||| || | || | ||| || ||| ||||| |||||
Sbjct 6299 AAAGA----CTCCGGGGACTTTTTATCAATATGAATGCAGTAATAGTTTTGAGGAGCGTA 6244
Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939
|||| || || | ||||| | ||| | || ||||||| ||| || || || ||
Sbjct 6243 TATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATGC 6184
Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999
|| ||||| || | | || | || || | | | | || || ||| | || ||
Sbjct 6183 AATGGGAAATTCTGCTGCTTCTTGGCTAAGAGGTTCCATAATATATTTCCGCCTTTTAAT 6124
Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032
||| | ||||||| ||||||| ||||||
Sbjct 6123 AAAGGAGGCACAATCAATTGTCATGTCGATATA 6091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570841505059200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |