Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq125410 194 2e-44 >seq125410 Length=11294 Score = 194 bits (214), Expect = 2e-44 Identities = 642/993 (65%), Gaps = 13/993 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||| | ||| || |||||||| || | || || |||||||| || |||| Sbjct 7075 TGTGTCGTAAATGCTCTTCCAGACACTGAATTGCAAAAGGATCAACGTCAGTATCAAATT 7016 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||| ||| |||||| || |||||| || || | Sbjct 7015 TGTTGGCAAAAAAATGATGT---TTCCGTAACATCCAGCTCAAATCTCCGACTCCAAAGA 6959 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | ||| | || |||||||| ||||| |||| || || | || | Sbjct 6958 CACATACAGAACGGACGTGAATTCCATTGCAAGGTGGGTAAGGAGCACCCTTGGATACAT 6899 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| |||| |||||||||||||||| ||| | || | ||| || || || | Sbjct 6898 CCCCTTCAAAGTAATGCCACTTCACAAACCGGGCAACGGCATTCATATCAGAAACATCAT 6839 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 |||||| || | || || ||||| ||||| | || || ||||| | || ||||| Sbjct 6838 ATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGAATTGTAGCCCAT 6780 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || || ||||||||||| |||| |||||| || || | ||| ||| Sbjct 6779 AAGTATTCATCAGGACTGTACGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTG 6720 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | || | || | || | || ||||| || || || || ||||| Sbjct 6719 TTCTCTAATACATATTCCACAAATTTCCTATTAACAACAAAATAGGCACTTCCAGAGAAA 6660 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || ||| || | ||| || | |||||| || | || ||| || | Sbjct 6659 ATGGGTGTGTTGAGAGGTGGATGCTGTTTGTCTATCCCCATATTTTTTACCTTGCCATCA 6600 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | || | |||||||| || ||| |||| | ||||| ||| || ||| Sbjct 6599 ACTACTTCATGATGTTTCTTCCATCTCACCTCTTTGTTTGAAGGCATTTTTTCTGTTTCT 6540 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||| || |||| | || | ||||| || || || || ||| | || ||||||| Sbjct 6539 AAACTATTTTCACCATTAAGGGCTTTCAACTTCTCCACAATTTCTTGATTGGTCTTGATT 6480 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 || || || || ||||| | || |||| ||||||||| || | || || || Sbjct 6479 GGGAAATCCGTGCCGCAGAGATTGATCAAGTACTTCCAGCTCACATTCCTCCTGTAGAGA 6420 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||||||| || | ||| || || || |||||||| || || |||||||| | || Sbjct 6419 TCCTTCATGCAGTTGAGATCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTCC 6360 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCC-AG 160819 | || ||||| | ||||| || | ||||| || | || || || | ||| || Sbjct 6359 AATTGGCTGGCAATGAAGACATTGTGAAAACATGATGCAATCCCTTTTACTGCTGCCAAG 6300 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||||| || | |||| || | || | ||| || ||| ||||| ||||| Sbjct 6299 AAAGA----CTCCGGGGACTTTTTATCAATATGAATGCAGTAATAGTTTTGAGGAGCGTA 6244 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 |||| || || | ||||| | ||| | || ||||||| ||| || || || || Sbjct 6243 TATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATGC 6184 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || ||||| || | | || | || || | | | | || || ||| | || || Sbjct 6183 AATGGGAAATTCTGCTGCTTCTTGGCTAAGAGGTTCCATAATATATTTCCGCCTTTTAAT 6124 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | ||||||| ||||||| |||||| Sbjct 6123 AAAGGAGGCACAATCAATTGTCATGTCGATATA 6091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570841505059200