Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq311453 87.8 3e-12 seq24600 87.8 3e-12 seq15708 86.0 1e-11 seq864359 84.2 4e-11 seq236318 84.2 4e-11 >seq311453 Length=2514 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| | || | || || ||| || || || Sbjct 389 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCT 448 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||| || ||||||||||| | ||||| || || || Sbjct 449 GAGAGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 508 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || | || Sbjct 509 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 568 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || |||||||| || || || || || | ||| ||||||||||| Sbjct 569 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | || | ||| | ||| || ||| || || ||| Sbjct 161 ATGCCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 220 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| ||||| ||||||||||| | ||||| || || || Sbjct 221 GAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 280 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || ||||| || | || | ||| Sbjct 281 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 340 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| || || || | ||| |||||||| Sbjct 341 ACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390 >seq24600 Length=2898 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | || || | || |||| || || ||||||||||| | || Sbjct 22 GATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCT 81 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| ||||| || || |||||||| || || ||||| || ||||| || | Sbjct 82 CTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGT 141 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | || || ||||| |||||||| || ||||| || || || | ||| ||||| Sbjct 142 GTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTG 201 Query 192534 CAT 192536 ||| Sbjct 202 CAT 204 >seq15708 Length=5494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 49875 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 ||||| | ||||||||||| |||||||| || ||||||||||| | ||||||| || | Sbjct 5402 AAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATGGCTGCAAAAGCACCA 5343 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGC 49966 |||||||| || || |||||| ||||| || Sbjct 5342 GAAAAGAAGATGCCTTCGACAGCAGCAAACGC 5311 >seq864359 Length=989 Score = 84.2 bits (92), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||||||||| | || || |||| ||||||||||| |||||||| ||||| | Sbjct 586 GATGTTATAATCAGACAGAGTACGCCCATCCTCCAATTGTTTGCCAGCAAAAATTAAACG 645 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTT 192439 |||||| ||||| || ||||||| || Sbjct 646 CTGTTGGTCAGGAGGAATTCCTTGTT 671 >seq236318 Length=20466 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 49866 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 49925 |||||| |||||| | ||| ||||||| |||| || || |||||||||||||||||| Sbjct 6230 TCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTCAGCCAAAATATTGATGCA 6171 Query 49926 AAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTA 49971 ||| | ||||||||| || || || || |||||||||| || Sbjct 6170 AAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTA 6125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973330542492000