Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq24600 86.0 1e-11 seq236318 84.2 4e-11 >seq24600 Length=2898 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| || || |||||||| || | |||||||||||||| || || ||||||| Sbjct 48 CGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTT 107 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || ||||| || ||||| || || || | || || ||||| |||| Sbjct 108 TGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAA 167 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || ||||| || || || | || |||||||| Sbjct 168 TGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 204 >seq236318 Length=20466 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39168 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 39227 |||||| |||||| | ||| ||||||| |||| || || |||||||||||||||||| Sbjct 6230 TCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTCAGCCAAAATATTGATGCA 6171 Query 39228 AAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 ||| | ||||||||| || || || || |||||||||| || Sbjct 6170 AAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTA 6125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895135152336000