Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq66226 113 5e-19 seq39449 98.7 1e-14 seq459322 95.1 1e-13 seq321951 86.0 8e-11 >seq66226 Length=1893 Score = 113 bits (124), Expect = 5e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||||||||| || ||| | |||||| Sbjct 750 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGCCACTTGGCCCTGCTCTGCGACAC 691 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||||||||| || ||||| ||||||| |||||| |||||||| Sbjct 690 CATGACCTGCCGCGGGCACTTGATGGCCATCACGCGTCACGGCGTCAACCGC 639 >seq39449 Length=2664 Score = 98.7 bits (108), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 1379 ACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1438 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||| | || ||||| |||| | | | | | Sbjct 1439 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGAGACTCAATG 1498 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 1499 ATGGCGTACCAGAGCTG 1515 >seq459322 Length=8537 Score = 95.1 bits (104), Expect = 1e-13 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 1254377 GGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC 1254436 ||| ||||||||||| || | | ||| ||| |||||||| |||| ||||| | | Sbjct 8093 GGCTGTCTGGATCTCACGGGAGGTGATGGTGGAGCGCTTGT---AGTGAGCCAGGCAGGA 8037 Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 |||| || | |||| |||| |||||||| ||||| |||||||||| ||| | Sbjct 8036 AGCCTTGGCTGTGGTGCGCTCGAAGATGTCGTTAACAAAGGAGTTCATGATGCTCATGGC 7977 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 ||| ||||||||| ||| || || |||||||| | ||||||||||| Sbjct 7976 ATTGGAGGAGATGCCGGTGTCAGG-TGGACCTGCTTCAACACCTTGTAGA 7928 >seq321951 Length=5427 Score = 86.0 bits (94), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| |||| || |||||||| ||||| || |||| | ||||||||| Sbjct 582 CATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 641 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||| |||||| || | ||| || | || | ||||| |||||| ||||||||||| Sbjct 642 CCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGCTCCAGGTA 701 Query 1628568 GCAGGCAAAGGCGCC 1628582 | ||| ||||| || Sbjct 702 GATGGCGAAGGCCCC 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6034600585402640