Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq66226 113 5e-19
seq39449 98.7 1e-14
seq459322 95.1 1e-13
seq321951 86.0 8e-11
>seq66226
Length=1893
Score = 113 bits (124), Expect = 5e-19
Identities = 92/112 (82%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| |||||| ||||||||||| |||||||||| || ||| | ||||||
Sbjct 750 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGCCACTTGGCCCTGCTCTGCGACAC 691
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| ||||||||| || ||||| ||||||| |||||| ||||||||
Sbjct 690 CATGACCTGCCGCGGGCACTTGATGGCCATCACGCGTCACGGCGTCAACCGC 639
>seq39449
Length=2664
Score = 98.7 bits (108), Expect = 1e-14
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
|| ||||||||||| |||||| || | | || |||||||||||||||||| | ||
Sbjct 1379 ACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1438
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
||||| || |||||||| |||||||||||| | || ||||| |||| | | | | |
Sbjct 1439 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGAGACTCAATG 1498
Query 1628287 ATGGCCGACCAGATCTG 1628303
||||| |||||| |||
Sbjct 1499 ATGGCGTACCAGAGCTG 1515
>seq459322
Length=8537
Score = 95.1 bits (104), Expect = 1e-13
Identities = 124/170 (73%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 1254377 GGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC 1254436
||| ||||||||||| || | | ||| ||| |||||||| |||| ||||| | |
Sbjct 8093 GGCTGTCTGGATCTCACGGGAGGTGATGGTGGAGCGCTTGT---AGTGAGCCAGGCAGGA 8037
Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496
|||| || | |||| |||| |||||||| ||||| |||||||||| ||| |
Sbjct 8036 AGCCTTGGCTGTGGTGCGCTCGAAGATGTCGTTAACAAAGGAGTTCATGATGCTCATGGC 7977
Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546
||| ||||||||| ||| || || |||||||| | |||||||||||
Sbjct 7976 ATTGGAGGAGATGCCGGTGTCAGG-TGGACCTGCTTCAACACCTTGTAGA 7928
>seq321951
Length=5427
Score = 86.0 bits (94), Expect = 8e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||| |||||||| |||| || |||||||| ||||| || |||| | |||||||||
Sbjct 582 CATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 641
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
||| |||||| || | ||| || | || | ||||| |||||| |||||||||||
Sbjct 642 CCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGCTCCAGGTA 701
Query 1628568 GCAGGCAAAGGCGCC 1628582
| ||| ||||| ||
Sbjct 702 GATGGCGAAGGCCCC 716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6034600585402640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |