Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 116 3e-21
seq433667 93.3 4e-14
seq24600 89.7 5e-13
>seq311453
Length=2514
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | || || ||||| || || || || || ||| |||
Sbjct 390 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGT 331
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||||||||| || |||||||| ||
Sbjct 330 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 271
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||| || ||||||||||| || | | | | || || || |||
Sbjct 270 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAAC 211
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| || || || ||| ||||
Sbjct 210 ATCCAGAAGGAGTCCACTCTCCACCTGGT 182
Score = 111 bits (122), Expect = 1e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | ||||| ||||| || || || || || || |||
Sbjct 618 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 559
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| ||||| || |||||||| ||
Sbjct 558 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAG 499
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||| ||||| || |||| ||| | | | ||||| || |||
Sbjct 498 CAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTACAAC 439
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| ||||||||||| || || || ||||
Sbjct 438 ATCCAAAAGGAATCCACCCTCCATCTTG 411
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | ||||| ||||| || || || || || || |||
Sbjct 162 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAAACCATAACACTTGAGGTGGAGCCCAGT 103
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||| ||||| ||||| || |||||||| ||
Sbjct 102 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 43
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| | |||||||||| || ||||||||||| |||
Sbjct 42 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGAT 7
>seq433667
Length=2244
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| ||||| || ||||||||||| || | |||||||||| || |||
Sbjct 23 AAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAA 82
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||| | | | | || || || ||||| || ||||| || || || |||
Sbjct 83 CAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAC 142
Query 24908 TTGGTGTTGCG 24918
|||| ||||
Sbjct 143 CTGGTCCTGCG 153
>seq24600
Length=2898
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || | || || || || ||||| || || || || | |
Sbjct 205 GATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGAGCCAAG 146
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || || ||||| ||||||||||| || ||||| || ||
Sbjct 145 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 86
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| || || |||||||| || | | | | || || || ||
Sbjct 85 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAA 26
Query 24883 CATTCAAAAGGAATCGACACTACA 24906
||| || ||||| || || || ||
Sbjct 25 CATCCAGAAGGAGTCCACCCTCCA 2
Score = 89.7 bits (98), Expect = 5e-13
Identities = 146/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || | || || || || ||||| || || || || | |
Sbjct 666 GATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCAAG 607
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || || ||||| ||||| ||||| || ||||| |||||
Sbjct 606 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGATCA 547
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||||||||| || || |||| ||| | | | | || || || ||
Sbjct 546 GCAGAGGTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCCTCTCTGACTACAA 487
Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910
||| || ||||| || || || || ||||
Sbjct 486 CATCCAGAAGGAGTCCACCCTCCATCTTG 458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444926681417600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |