Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq459322 120 5e-21
seq66226 102 1e-15
seq39449 96.9 5e-14
>seq459322
Length=8537
Score = 120 bits (132), Expect = 5e-21
Identities = 183/260 (70%), Gaps = 21/260 (8%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| || || |||||||| ||||| |||||||| || |||||||||| ||| |||
Sbjct 8181 TGTACTTAGTCACAGCCTTGGTGCCCTCGGAGACGGCATGTTTGGCCAGTTCTCCG-GCA 8123
Query 1485530 TGATCAGGCGCAC----------------GGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573
|| ||| | ||| ||||||||||| |||| | ||| |||
Sbjct 8122 GGAGGAGGTACNNNNNNNNNNNNNNNNNNGGCTGTCTGGATCTCACGGGAGGTGATGGTG 8063
Query 1485574 TTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1485633
|||||||| |||| || ||||| | |||| || | |||| |||| ||||||
Sbjct 8062 GAGCGCTTGT-AGTGAGC--CAGGCAGGAAGCCTTGGCTGTGGTGCGCTCGAAGATGTCG 8006
Query 1485634 TTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACC 1485693
|| ||||| ||||||||||| ||| | ||| ||||||||| ||| |||| |||
Sbjct 8005 TTAACAAAGGAGTTCATGATGCTCATGGCATTGGAGGAGATGCCGGTGTC-AGGTGGACC 7947
Query 1485694 TGCTTGAGCACCTTGTAAAC 1485713
||||| | ||||||||| ||
Sbjct 7946 TGCTTCAACACCTTGTAGAC 7927
>seq66226
Length=1893
Score = 102 bits (112), Expect = 1e-15
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185
||| |||||||| |||||| ||||||||||| |||||||||| || ||| | ||||||
Sbjct 750 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGCCACTTGGCCCTGCTCTGCGACAC 691
Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236
|||| ||| ||||| || ||||| ||||||| |||||| |||||||
Sbjct 690 CATGACCTGCCGCGGGCACTTGATGGCCATCACGCGTCACGGCGTCAACCG 640
>seq39449
Length=2664
Score = 96.9 bits (106), Expect = 5e-14
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643
||||||||| |||||| || | ||||||||||||||||||||||||| || ||||
Sbjct 1384 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTT 1443
Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703
| || |||||||| ||||||||||| | |||||||| |||| | | | ||||||
Sbjct 1444 GCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGAGACTCAATGATGGC 1503
Query 2071704 CGACCA 2071709
||||
Sbjct 1504 GTACCA 1509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7822219798040880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |