Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq459322 120 5e-21 seq66226 102 1e-15 seq39449 96.9 5e-14 >seq459322 Length=8537 Score = 120 bits (132), Expect = 5e-21 Identities = 183/260 (70%), Gaps = 21/260 (8%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| ||||| |||||||| || |||||||||| ||| ||| Sbjct 8181 TGTACTTAGTCACAGCCTTGGTGCCCTCGGAGACGGCATGTTTGGCCAGTTCTCCG-GCA 8123 Query 1485530 TGATCAGGCGCAC----------------GGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 || ||| | ||| ||||||||||| |||| | ||| ||| Sbjct 8122 GGAGGAGGTACNNNNNNNNNNNNNNNNNNGGCTGTCTGGATCTCACGGGAGGTGATGGTG 8063 Query 1485574 TTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1485633 |||||||| |||| || ||||| | |||| || | |||| |||| |||||| Sbjct 8062 GAGCGCTTGT-AGTGAGC--CAGGCAGGAAGCCTTGGCTGTGGTGCGCTCGAAGATGTCG 8006 Query 1485634 TTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACC 1485693 || ||||| ||||||||||| ||| | ||| ||||||||| ||| |||| ||| Sbjct 8005 TTAACAAAGGAGTTCATGATGCTCATGGCATTGGAGGAGATGCCGGTGTC-AGGTGGACC 7947 Query 1485694 TGCTTGAGCACCTTGTAAAC 1485713 ||||| | ||||||||| || Sbjct 7946 TGCTTCAACACCTTGTAGAC 7927 >seq66226 Length=1893 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| |||||||||| || ||| | |||||| Sbjct 750 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGCCACTTGGCCCTGCTCTGCGACAC 691 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| ||||| || ||||| ||||||| |||||| ||||||| Sbjct 690 CATGACCTGCCGCGGGCACTTGATGGCCATCACGCGTCACGGCGTCAACCG 640 >seq39449 Length=2664 Score = 96.9 bits (106), Expect = 5e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||||||||| |||||| || | ||||||||||||||||||||||||| || |||| Sbjct 1384 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTT 1443 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | || |||||||| ||||||||||| | |||||||| |||| | | | |||||| Sbjct 1444 GCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTGAGACTCAATGATGGC 1503 Query 2071704 CGACCA 2071709 |||| Sbjct 1504 GTACCA 1509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7822219798040880