Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq24600 129 4e-25 seq311453 123 2e-23 seq433667 93.3 3e-14 >seq24600 Length=2898 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 439 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 498 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| |||| |||||| ||||| ||||||| | ||||| || | || Sbjct 499 AGGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGA 558 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| || || || || || | ||| | | ||| | Sbjct 559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCAC--ATTCTCAATGGTGTCACTTGGCTCCA 616 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || | |||||| |||||||||||||| Sbjct 617 CCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 665 Score = 107 bits (118), Expect = 1e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 34780 GGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCC 34839 |||| ||||||||| ||||| ||||| || ||| |||| | || ||||| |||||||| Sbjct 7 GGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGCTTTCC 66 Query 34840 GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTT 34899 || |||||||| | || ||||| | || | || || ||||| | ||||| || Sbjct 67 AGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTT 126 Query 34900 GACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || || || | ||| | | ||| || || | ||| |||||||| || || | | Sbjct 127 CAC--ATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTCAAG 184 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 185 GTCTTCACAAAGATCTGCAT 204 >seq311453 Length=2514 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 164 CCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 223 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| || || || || |||||||| | |||||||| | || Sbjct 224 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 283 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||||| | | || | ||| ||| || || Sbjct 284 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 343 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| ||||| ||||| || | |||||| ||||||||||||||| Sbjct 344 TCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATG 391 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | |||| ||||| || ||||| ||||| || Sbjct 392 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAG 451 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| |||| |||||| || || |||||||| | |||||||| | || Sbjct 452 AGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 511 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 512 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 569 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || || | |||||| |||||||||||||| Sbjct 570 CCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 618 >seq433667 Length=2244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||||||| | |||| ||||||||| ||||| ||||| || Sbjct 165 CCACCCCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 106 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| || || || || |||||||| | ||||| || | || Sbjct 105 AGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 46 Query 34871 ACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 45 ATGCCTTCCTTGTC 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322184184746480