Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7881 389 3e-102 seq253197 100 2e-15 seq308505 93.3 3e-13 seq244066 91.5 1e-12 seq88391 87.8 1e-11 >seq7881 Length=13965 Score = 389 bits (430), Expect = 3e-102 Identities = 944/1414 (67%), Gaps = 22/1414 (2%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||||| ||||| || |||||||| ||||| | |||||||| || |||||||| || || Sbjct 5902 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATTTGGGGCACA 5843 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | |||||||| || ||| || | ||| | ||||| ||| || || || Sbjct 5842 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 5783 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | || |||||||| | | ||| | || | ||||| | || || ||||||| Sbjct 5782 GTCATGGCTCTCTCACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAAT 5725 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| || ||||| |||||||| | | || | Sbjct 5724 AGGTAGTGAAGG-TCTGAGTTTGCTTGGTGGGAATAGTTGTGTTGCGCTTGATTAAGGCA 5666 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||| || || | ||| |||||||| || | ||||||| || | Sbjct 5665 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGG 5606 Query 281723 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | ||| | ||||| | | || | ||| | |||||||| || || | ||||||||| Sbjct 5605 AGGTCTTGCACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACC 5547 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 281840 |||||| ||||||||||| ||||| | ||| ||||| | ||| ||||| || || | Sbjct 5546 ATATGCTACAGCTTCATCGGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 5487 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| | || || | | ||| |||||||||| ||| || ||||| | |||||||||| Sbjct 5486 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 5428 Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | |||| ||| || || || | ||| | | | || || || ||||||||| | Sbjct 5427 TAATCTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 5368 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | | || | || | | || || || || ||| | |||| | || ||| Sbjct 5367 CACGGAAGAGATCAGCATTGAGCTCCTCAAAACGAGCACGGGTAATGGATGTATAGAAAT 5308 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| || || || || || |||| ||||| | || || || || || || | || Sbjct 5307 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAGCTCAGGGTAC 5248 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 |||| || | ||||| ||||| | || | ||| | || | ||| ||| | | Sbjct 5247 GTTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 5190 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 || |||| || | |||||| ||||| ||| | | || | ||||| ||||| Sbjct 5189 GTCACGCTTATGCTTGCGCTTGAATTCTTCCACAAAGTGACTCACCATGCGATTGTCAAA 5130 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || ||||| | |||| ||| | |||| | | |||| || | |||||||| Sbjct 5129 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 5070 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 || | ||||| | ||||||| || |||||||||| ||||| || || || ||| | Sbjct 5069 AATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACGTTCTT 5010 Query 282319 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 | || || |||||||| | |||||| |||| ||||| || || || || Sbjct 5009 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCGGCCGTGGGCTC 4950 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 |||||| || | ||| || || ||||| | ||| | ||||||||||| |||||||| | Sbjct 4949 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCG 4890 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAA 282491 ||| || || || || |||||||| |||||||| || ||| |||| |||| || | Sbjct 4889 TTGGGAGTCATTGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCA 4831 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||||| ||| ||| |||||||| | || | ||| || ||||||| ||| ||| Sbjct 4830 AGTAAGCCTCGGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 4771 Query 282552 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 | | | |||| ||| | || |||| | | || || | | || | | Sbjct 4770 AGAAATTCTTGTTCTCACCCTTGTACTCGACTTGCACCTTGGGCTTCCCAGCTTCACTCA 4711 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 || || ||||| | ||||||||| || || || | |||||| ||| | | | Sbjct 4710 CCACACGGAAAGGCCAGTGTTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGC 4651 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || | || || ||||| || || || ||| | ||||| | || |||||| |||| Sbjct 4650 CGATGAGACGCTTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGG 4591 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 |||||||||| || || |||| || || ||||| | |||||| || || ||||| | Sbjct 4590 CTGCATCTCCGATGAGGCGTTCAGTGTCCGTAAAGGCAACATAACTCGGTGTAGTGCGGT 4531 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACC 282825 | ||||| || || || ||||| || ||||| || Sbjct 4530 TGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 4497 >seq253197 Length=8662 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 400294 aaaTGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 2431 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 2372 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | |||||||| || ||||| ||||||||||| | ||||| Sbjct 2371 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTCTTAATGTA 2312 Query 400414 AGGGATGC 400421 |||| || Sbjct 2311 CGGGAAGC 2304 >seq308505 Length=989 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| ||||| || ||||| ||||| ||||||| | || Sbjct 48 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTGATAATTCGGAGCACG 107 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || ||||| | || || || || ||||| Sbjct 108 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAATAA 167 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || ||||| || | || |||| ||| || Sbjct 168 GCTGGAACTGTGACCACAGCATTTGTAAC 196 >seq244066 Length=8106 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 1079013 TGTAAAATAATAACAAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTC 1079072 |||| ||| | | ||| | ||| ||||||| || | |||| | ||| | |||||| Sbjct 6763 TGTAGGATATTGAGAAGCAGCATAGAATTAGTGACTTGTCCATATAATTCCTGTTGTTTT 6822 Query 1079073 ATTGCACACGACAAATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAAC 1079132 ||| | || |||||||||||| |||| | | |||||| |||| |||||||||||| Sbjct 6823 GCAGCATAGGATAAATTAATCAAAGTCCAGCCTACAATTCCAGGTCGGCCATTAAAAAAC 6882 Query 1079133 AGTTTCAAATCA------GTTCCAAATATTTCAGGATTAAATTCAATACCCATAACAATA 1079186 | ||| |||||| |||| || | |||||||||||||| ||||| | | Sbjct 6883 AATTTGAAATCAAACCACTTTCCCAAGCGT---GGATTAAATTCAATTCCCATCATGAAG 6939 Query 1079187 TCATAAAATAATTTTCCTGTAAATTT 1079212 || || || || || || || ||||| Sbjct 6940 TCGTAGAAGAAATTGCCAGTGAATTT 6965 >seq88391 Length=12687 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 1296 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 1237 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||||||||| | |||||||| ||| |||||||||||||| Sbjct 1236 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 1191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3697233663445920