Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq7881 389 3e-102
seq253197 100 2e-15
seq308505 93.3 3e-13
seq244066 91.5 1e-12
seq88391 87.8 1e-11
>seq7881
Length=13965
Score = 389 bits (430), Expect = 3e-102
Identities = 944/1414 (67%), Gaps = 22/1414 (2%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
||||| ||||| || |||||||| ||||| | |||||||| || |||||||| || ||
Sbjct 5902 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATTTGGGGCACA 5843
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | |||||||| || ||| || | ||| | ||||| ||| || || ||
Sbjct 5842 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 5783
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603
|| | || |||||||| | | ||| | || | ||||| | || || |||||||
Sbjct 5782 GTCATGGCTCTCTCACCCTCATACACTTGTACCAGCACACTAC--TCTGGTTGTCTGAAT 5725
Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662
| || || || |||| ||| || ||||| |||||||| | | || |
Sbjct 5724 AGGTAGTGAAGG-TCTGAGTTTGCTTGGTGGGAATAGTTGTGTTGCGCTTGATTAAGGCA 5666
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||||||||| || || | ||| |||||||| || | ||||||| || |
Sbjct 5665 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGG 5606
Query 281723 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781
| | ||| | ||||| | | || | ||| | |||||||| || || | |||||||||
Sbjct 5605 AGGTCTTGCACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCACC 5547
Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 281840
|||||| ||||||||||| ||||| | ||| ||||| | ||| ||||| || || |
Sbjct 5546 ATATGCTACAGCTTCATCGGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 5487
Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900
||| | || || | | ||| |||||||||| ||| || ||||| | ||||||||||
Sbjct 5486 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 5428
Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960
| |||| ||| || || || | ||| | | | || || || ||||||||| |
Sbjct 5427 TAATCTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 5368
Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020
| | || | || | | || || || || ||| | |||| | || |||
Sbjct 5367 CACGGAAGAGATCAGCATTGAGCTCCTCAAAACGAGCACGGGTAATGGATGTATAGAAAT 5308
Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080
|||| || || || || || |||| ||||| | || || || || || || | ||
Sbjct 5307 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGGGTGGAGGAGCTCAGGGTAC 5248
Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138
|||| || | ||||| ||||| | || | ||| | || | ||| ||| | |
Sbjct 5247 GTTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 5190
Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198
|| |||| || | |||||| ||||| ||| | | || | ||||| |||||
Sbjct 5189 GTCACGCTTATGCTTGCGCTTGAATTCTTCCACAAAGTGACTCACCATGCGATTGTCAAA 5130
Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258
|| || || ||||| | |||| ||| | |||| | | |||| || | ||||||||
Sbjct 5129 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 5070
Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318
|| | ||||| | ||||||| || |||||||||| ||||| || || || ||| |
Sbjct 5069 AATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGCACGTTCTT 5010
Query 282319 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372
| || || |||||||| | |||||| |||| ||||| || || || ||
Sbjct 5009 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCGGCCGTGGGCTC 4950
Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432
|||||| || | ||| || || ||||| | ||| | ||||||||||| |||||||| |
Sbjct 4949 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTGGTGGCTTGGCG 4890
Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAA 282491
||| || || || || |||||||| |||||||| || ||| |||| |||| || |
Sbjct 4889 TTGGGAGTCATTGAAGTATGCAGGTACAGTAATTACAGCACTCTG-GACTTTGCAACCCA 4831
Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551
||||| ||| ||| |||||||| | || | ||| || ||||||| ||| |||
Sbjct 4830 AGTAAGCCTCGGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 4771
Query 282552 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611
| | | |||| ||| | || |||| | | || || | | || | |
Sbjct 4770 AGAAATTCTTGTTCTCACCCTTGTACTCGACTTGCACCTTGGGCTTCCCAGCTTCACTCA 4711
Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671
|| || ||||| | ||||||||| || || || | |||||| ||| | | |
Sbjct 4710 CCACACGGAAAGGCCAGTGTTTCATATCGGACTGCACCGTAGGGTCATCAAATTTGCGGC 4651
Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731
| || | || || ||||| || || || ||| | ||||| | || |||||| ||||
Sbjct 4650 CGATGAGACGCTTGGCATCGAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGG 4591
Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791
|||||||||| || || |||| || || ||||| | |||||| || || ||||| |
Sbjct 4590 CTGCATCTCCGATGAGGCGTTCAGTGTCCGTAAAGGCAACATAACTCGGTGTAGTGCGGT 4531
Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACC 282825
| ||||| || || || ||||| || ||||| ||
Sbjct 4530 TGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 4497
>seq253197
Length=8662
Score = 100 bits (110), Expect = 2e-15
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 400294 aaaTGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353
|| || || || ||||||||||| |||||||||||||| ||| | ||| | |||||||||
Sbjct 2431 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 2372
Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413
||| | || || || | |||||||| || ||||| ||||||||||| | |||||
Sbjct 2371 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAACTTCTTAATGTA 2312
Query 400414 AGGGATGC 400421
|||| ||
Sbjct 2311 CGGGAAGC 2304
>seq308505
Length=989
Score = 93.3 bits (102), Expect = 3e-13
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | || || |||| ||||| || ||||| ||||| ||||||| | ||
Sbjct 48 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTGATAATTCGGAGCACG 107
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| |||| |||||||| || ||||| | || || || || |||||
Sbjct 108 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAATAA 167
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480
|| ||||| || | || |||| ||| ||
Sbjct 168 GCTGGAACTGTGACCACAGCATTTGTAAC 196
>seq244066
Length=8106
Score = 91.5 bits (100), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 9/206 (4%)
Strand=Plus/Plus
Query 1079013 TGTAAAATAATAACAAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTC 1079072
|||| ||| | | ||| | ||| ||||||| || | |||| | ||| | ||||||
Sbjct 6763 TGTAGGATATTGAGAAGCAGCATAGAATTAGTGACTTGTCCATATAATTCCTGTTGTTTT 6822
Query 1079073 ATTGCACACGACAAATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAAC 1079132
||| | || |||||||||||| |||| | | |||||| |||| ||||||||||||
Sbjct 6823 GCAGCATAGGATAAATTAATCAAAGTCCAGCCTACAATTCCAGGTCGGCCATTAAAAAAC 6882
Query 1079133 AGTTTCAAATCA------GTTCCAAATATTTCAGGATTAAATTCAATACCCATAACAATA 1079186
| ||| |||||| |||| || | |||||||||||||| ||||| | |
Sbjct 6883 AATTTGAAATCAAACCACTTTCCCAAGCGT---GGATTAAATTCAATTCCCATCATGAAG 6939
Query 1079187 TCATAAAATAATTTTCCTGTAAATTT 1079212
|| || || || || || || |||||
Sbjct 6940 TCGTAGAAGAAATTGCCAGTGAATTT 6965
>seq88391
Length=12687
Score = 87.8 bits (96), Expect = 1e-11
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380
||||||||| ||||| | ||||| || | || ||||| ||||| ||||||||||
Sbjct 1296 CTTTGTCTTCAACCTTATCTAATCCATAAGCTAGGGCTGCAGCTGTTGGCTCATTAATAA 1237
Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
|||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 1236 CTCTCAAAACATTCAATCCAGCAATCTGTCCAGCATCTTTAGTGGC 1191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3697233663445920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |