Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq436380 87.8 2e-12 >seq436380 Length=8816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 21121 TTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACT 21180 || ||| || ||||| || | || |||||| | ||| | |||||| |||| |||| || Sbjct 7226 TTGTAGTATATGGGGACCAACTTGTGATGGCCTTGATCGTATTGTTGAGCGTTGTGGCCT 7285 Query 21181 GCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGT 21240 ||||| ||||| || || || ||| | | |||||||||||||| || || | || | Sbjct 7286 ACCAGAACTTCAGGTTGGGGATTGGATGTTGTTTGAAAACATGGGAGCCTATA-CTGTGG 7344 Query 21241 CAG-CTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTAT 21291 ||| | |||| ||||| || || || | | |||| || |||||||| || Sbjct 7345 CAGCCGCTTCTACCTTCAATGGATTTCAGAGGCCAACAATACACTATGTAAT 7396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458423884665600