Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 161 2e-34
seq121033 150 3e-31
seq24600 136 8e-27
seq433667 113 9e-20
seq99924 87.8 3e-12
>seq311453
Length=2514
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||| || || | ||| ||||| || || ||||| || || || |||||
Sbjct 164 CCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 223
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | |||||||| || ||||| ||||||||||| || || || || || |||||
Sbjct 224 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 283
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || || || ||||| || || ||||||||||| || ||| | ||||| ||
Sbjct 284 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 343
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 344 TCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| |||||| || | || || || ||||| || || || || || || ||
Sbjct 392 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAG 451
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| | ||| || ||||||||||| || || || || || |||||
Sbjct 452 AGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 511
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| ||||| ||||| || || ||||| || || || ||| | || || ||
Sbjct 512 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 571
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | || || || || || ||||| ||||| ||||| |||||||||
Sbjct 572 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 619
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| || ||||| ||||||||||| || || || || || ||||| || ||||||
Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| || || ||||| || || || |||||||| || ||| | || || || || | |||
Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTT 124
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || || ||||| ||||| ||||| || |||||
Sbjct 125 ATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq121033
Length=27437
Score = 150 bits (166), Expect = 3e-31
Identities = 137/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198
|||||| |||| |||||||||||||| ||||| ||||| || || || | || || |
Sbjct 12627 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAAT 12686
Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258
|| ||||| || || || || |||||||| |||||||| | || || ||||| |||||
Sbjct 12687 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTT 12746
Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311
||||||||||||||| | ||||| ||||| |||||| |||| ||||| ||||
Sbjct 12747 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACAAG 12799
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502
|| ||||| | |||| || || ||||| |||| ||||| || |||||||| |||||
Sbjct 16315 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGTCCCTTTCCT 16374
Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562
||||||| || ||| || || | ||| | | |||||||| | ||||||||||||
Sbjct 16375 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 16434
Query 60563 TTCTATTTTAGAACATACAAGA 60584
||||| | | | ||||||||||
Sbjct 16435 TTCTACTATCGGACATACAAGA 16456
>seq24600
Length=2898
Score = 136 bits (150), Expect = 8e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || ||||| || || || ||||| || | | |||||||| || ||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|||||||||||||| || || ||||| || ||||| || ||||| || || || || ||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||| ||||| || ||| | || || || || | || || ||||| || |||
Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| ||||| ||||| ||||||||
Sbjct 182 AAGGTCTTCACAAAGATCTGCAT 204
>seq433667
Length=2244
Score = 113 bits (124), Expect = 9e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || |||| |||||| || | ||| || || || || ||||| || || || |||||
Sbjct 166 ACCACCCCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 107
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| ||||||||||| || || || ||||| |||||
Sbjct 106 GAGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 47
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747
|| |||||||| || || ||||| || || ||||| || || ||
Sbjct 46 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGT 2
>seq99924
Length=25621
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679
|||||||| || || || ||||| || | | || ||| | || || ||||||||||||
Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|| || || ||||| || | ||| || |||||||| || || || || || || |||||
Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987
Query 82740 TCAATCGT 82747
||||| ||
Sbjct 22986 TCAATGGT 22979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 970707786048880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |