Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq121033 156 8e-33 >seq121033 Length=27437 Score = 156 bits (172), Expect = 8e-33 Identities = 137/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| |||||||||||||| ||||| |||||||| || || | || ||| | Sbjct 12627 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAAT 12686 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || |||||||| |||| ||||| || || ||||| ||||| Sbjct 12687 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTT 12746 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||||||||||||| | ||||| || || |||||| |||||||||| || Sbjct 12747 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 12797 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || ||||| | |||| || || ||||| |||| ||||| || ||||| || ||||| Sbjct 16315 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGTCCCTTTCCT 16374 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || ||||| | | |||||||| | ||||||||||| Sbjct 16375 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 16434 Query 58793 TTCTATTTTAGAACATACAAGA 58814 ||||| | | | |||||||||| Sbjct 16435 TTCTACTATCGGACATACAAGA 16456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893429409651200