Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq121033 156 8e-33
>seq121033
Length=27437
Score = 156 bits (172), Expect = 8e-33
Identities = 137/171 (80%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428
|||||| |||| |||||||||||||| ||||| |||||||| || || | || ||| |
Sbjct 12627 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAAT 12686
Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488
|| ||||| || || || || |||||||| |||| ||||| || || ||||| |||||
Sbjct 12687 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTT 12746
Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
||||||||||||||| | ||||| || || |||||| |||||||||| ||
Sbjct 12747 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 12797
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732
|| ||||| | |||| || || ||||| |||| ||||| || ||||| || |||||
Sbjct 16315 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGTCCCTTTCCT 16374
Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792
||||||| ||| ||| || || ||||| | | |||||||| | |||||||||||
Sbjct 16375 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 16434
Query 58793 TTCTATTTTAGAACATACAAGA 58814
||||| | | | ||||||||||
Sbjct 16435 TTCTACTATCGGACATACAAGA 16456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 893429409651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |