Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq311453 120 3e-22 seq24600 96.9 3e-15 seq26672 84.2 2e-11 >seq311453 Length=2514 Score = 120 bits (132), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||| |||||||||||||||||||||||||||||| |||| Sbjct 473 TGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATC 532 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | ||||| |||||||||| || | ||||| |||||| ||| Sbjct 533 TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCG 592 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 593 GTCAAGGTCTTCACAAAGATCTGCAT 618 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | ||| ||| || ||||| ||||| Sbjct 194 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCA 253 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||||||||| |||||||| ||||| |||||| |||| Sbjct 254 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 313 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| |||| ||||| || | ||||| |||||| || |||| || Sbjct 314 ACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTC 373 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 374 TTGACAAAGATCTGCATG 391 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| ||||| || | || |||| ||||||||||||||| |||||||||||| Sbjct 8 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 67 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| ||||| |||||||||| || | || | | Sbjct 68 TCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTATG 127 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| ||||||| || || || || || |||||| Sbjct 128 GTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCATG 163 >seq24600 Length=2898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || | | Sbjct 462 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAATT 520 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || |||||| || ||||| |||||||||||||| ||| | Sbjct 521 GCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATTT 580 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| | |||||||| || | ||| | ||| ||||| | Sbjct 581 TGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTAATGGTCTTGCCAG 640 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 641 TCAAGGTCTTCACAAAGATCTGCAT 665 >seq26672 Length=7677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 133557 CCTTCCTTGTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 ||||||||||| ||| |||||| |||| | |||| ||||| | |||||||| || Sbjct 2175 CCTTCCTTGTCC-TGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTC 2117 Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||||||||| || ||||| || ||||||||||| Sbjct 2116 AAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478079483580800