Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq125410 159 4e-34 seq9417 105 8e-18 >seq125410 Length=11294 Score = 159 bits (176), Expect = 4e-34 Identities = 598/924 (65%), Gaps = 29/924 (3%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 || ||||| | || ||| || |||||||| | || || || || ||| || Sbjct 7076 TTGTGTCGTAAATGCTCTTCCAGACACTGAATTGCAAAAGGATCAACGTCAGTATCAAAT 7017 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| || || | ||||| ||| || ||||| | | ||| || ||| || Sbjct 7016 TTGTTGGCAAAAAAATGATGT---TTCCGTAACATCCAGCTCAAATCTCCGACTCCAAAG 6960 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || || || ||||| | || |||| || || || | || || | | ||| Sbjct 6959 ACACATACAGAACGGACGTGAATTCCATTGCAAGGTGGGTAAGGAGCACCCTTGGATACA 6900 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 ||||| || |||| |||||||| || |||| | | || | ||| || || || Sbjct 6899 TCCCCTTCAAAGTAATGCCACTTCACAAACCGGGCAACGGCATTCATATCAGAAACATCA 6840 Query 162307 TACTTGTACACTGACGGC-ACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 || |||| ||||| | | || || |||||||| | || | || ||| | |||||||| Sbjct 6839 TATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGAATTGTAGCCCA 6781 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTT-- 162423 | || ||| || ||||| ||||| || || | ||| || || || | || || Sbjct 6780 TAAGTATTCATCAGGACTGTACGTGTCTTTAGCCCATTCTATAAAAGCAA-GAATTTTGC 6722 Query 162424 --TTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAG 162481 || || ||| | || || | ||| | |||| ||| || || || |||| Sbjct 6721 TGTTCTCTAATACA---TATTCCACAAATTTCCTATTAACAACAAAATAGGCACTTCCAG 6665 Query 162482 AAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTC 162541 | || | |||| || | ||| || ||| ||||||| ||| | || |||| | | Sbjct 6664 AGAAAATGGGTGTGTTGAGAGGTGGATGCTGTTTGTCTATCCCCATATTTTTTACCTTGC 6605 Query 162542 CCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG---TGTT 162598 | || || || | || ||| |||| || || |||| || | || || | || Sbjct 6604 CATCAACTACTTCATGATGTTTCTTCCATCTCACC-TCTT--TGTTTGAAGGCATTTTTT 6548 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || |||| ||| || ||| | ||| |||| || ||| || ||| |||||| Sbjct 6547 CTGTTTCTAAACTATTTTCACCATTAAGGGCTTTCAACTTCTCCACAATTTCTTGATTGG 6488 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 |||| | || || || |||||||||||||| || | || ||||| | || | | Sbjct 6487 TCTTGATTGGGAAATCCGTGCCGCAGAGATTGATCAAGTACTTCCAGCTCACATTCCTCC 6428 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| ||||||| | ||||| ||||| || || || || ||||| || || ||||| | Sbjct 6427 TGTAGAGATCCTTCATGCAGTTGAGATCAGCTTGTACCCGGCTCCATGATGCATACACTA 6368 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 | || ||||| |||| | |||||||||| ||||| || | ||||| | || | Sbjct 6367 CACTTTCCAATTGGCTGGCAATGAAGACATTGTGAAAACATGATGCAATCCCTTTTACTG 6308 Query 162839 CCAGTGAGAACATCGGGTCCG----CTTTCCTATCTACGTGTACGCAGT-ATAGATTCTG 162893 | || || | | |||| |||| |||| | || | ||||| |||| || || Sbjct 6307 C---TGCCAAGAAAGACTCCGGGGACTTT-TTATCAATATGAATGCAGTAATAG-TTTTG 6253 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| ||||| |||| ||||| | |||||| | ||| | || ||||| | |||| || Sbjct 6252 AGGAGCGTATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTAT 6193 Query 162954 AGAATACGCTATGGGGAACTCAGC 162977 ||||| || ||||| || || || Sbjct 6192 TGAATATGCAATGGGAAATTCTGC 6169 >seq9417 Length=10854 Score = 105 bits (116), Expect = 8e-18 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| |||| | |||||||| ||||| ||||| | ||| || || ||||| || || Sbjct 9199 CAGGTCCTTCATGCAGTTCAGGTCGGCTTGGACCCTCGACCAAGAGGCATACACCACACT 9140 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 |||| | ||| || | ||| ||||||||||| || || | || || ||||| Sbjct 9139 CTCCTGCTTAGAAGCCAGAAAAACATTGTCGAAGCAGGAGGCAATGGCCCGAACGGCTTT 9080 Query 162843 T--GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 | || || || || | ||| || || || || || ||||||| |||||||| || Sbjct 9079 TTGGAAAAGTTCAGG--AGATTTTCTGTCCACATGGACACAGTATACGTTCTGAGGAGCA 9022 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 |||||| |||||||| || || |||||||| || || | || | ||| || ||||| Sbjct 9021 AAGATGGATCTCAGTAACCTTTCAAACATCTCGATATTCTCATGGATCACCATGGAATAA 8962 Query 162961 GCTATGGGGAA 162971 || || ||||| Sbjct 8961 GCAATAGGGAA 8951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572040904832000