Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq834305 107 6e-20 seq335145 98.7 3e-17 seq184490 98.7 3e-17 seq23748 80.6 8e-12 >seq834305 Length=662 Score = 107 bits (118), Expect = 6e-20 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 657 AAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 598 Query 2833 GCTT 2836 |||| Sbjct 597 GCTT 594 >seq335145 Length=1272 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 679 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 738 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 739 CCGGGTTTCGGC 750 >seq184490 Length=590 Score = 98.7 bits (108), Expect = 3e-17 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 351 AAGTAGCTCACTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTGCCTGGTTCAATCCCGG 410 Query 2833 GCTT 2836 |||| Sbjct 411 GCTT 414 >seq23748 Length=3444 Score = 80.6 bits (88), Expect = 8e-12 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 2777 AGCTCAGTTGGG-AGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||| | ||| |||||||||||||||||||||||||||||| ||||| || | Sbjct 652 AGCTCAGTTGGGGAAAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCCACCCCAGGTT 593 Query 2836 T 2836 | Sbjct 592 T 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15696368048400