Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq39449 102 1e-15 >seq39449 Length=2664 Score = 102 bits (112), Expect = 1e-15 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| | | | | || | ||||| || || ||||||||| ||||| Sbjct 1515 CAGCTCTGGTACGCCATCATTGAGTCTCAGACGGAGACGGGGACACCCTACATGCTCTAC 1456 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || ||||| || ||||||||||||||||||||||||| | || | ||| Sbjct 1455 AAGGACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1397 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||||||||| || Sbjct 1396 CCTCTGCACCGAGATTGT 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7092555491355040