Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq311453 116 4e-21 seq24600 95.1 1e-14 seq433667 91.5 1e-13 >seq311453 Length=2514 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 164 CCACCCCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 223 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||||||||| ||||| |||| | |||||| ||||| || Sbjct 224 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 283 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || ||||| || | ||||| | |||||| Sbjct 284 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 343 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || || || || || || || ||||| Sbjct 344 TCCAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || |||||||||||||| ||||||||||| Sbjct 392 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAG 451 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | || || || ||||| |||| | |||||| ||||| || Sbjct 452 AGAGTGCGGCCATCTTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGG 511 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | ||||| | ||||| Sbjct 512 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 571 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| ||||| || || || || || || |||||||| Sbjct 572 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||||||||| ||||| |||| | |||||| ||||| || |||||||| || Sbjct 8 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTG 67 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || || |||| || | |||| ||||| | ||||| || || || || Sbjct 68 TCCTGGATCTTGGCCTTGA-CGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTTAT 126 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| ||||| || || || || || |||||||| Sbjct 127 GGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162 >seq24600 Length=2898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 439 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 498 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | || ||||| ||||| ||||| | ||||||||| || || Sbjct 499 AGGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGA 558 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| || || || | ||||| | ||||| Sbjct 559 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACC 618 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || |||||||| || || || || || || || || || ||||| || Sbjct 619 TCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| ||||| || ||||||||||| || |||| | ||| || ||||| Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||| | ||| || || || || ||||||||||| || || ||||| Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| | ||||| || || |||||||| || || || Sbjct 122 GCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTAATGGTCTTCCCAGTC 181 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| Sbjct 182 AAGGTCTTCACAAAGATCTGCAT 204 >seq433667 Length=2244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 165 CCACCCCTCAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 106 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| | |||||||||||| || Sbjct 105 AGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 46 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 45 ATGCCTTCCTTGTCCTGGATCTT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499814253078400