Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 143 4e-29
seq15708 129 8e-25
>seq236318
Length=20466
Score = 143 bits (158), Expect = 4e-29
Identities = 106/124 (85%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||||||||| | || |||||||| || ||||||||||||||||| || || |
Sbjct 6250 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCT 6191
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| | |||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 6190 TCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 6131
Query 39759 CAAC 39762
| ||
Sbjct 6130 CTAC 6127
>seq15708
Length=5494
Score = 129 bits (142), Expect = 8e-25
Identities = 109/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| ||||| | |||||| || || || || || ||||||| || | ||| |||
Sbjct 5429 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5370
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
|||||||||||||| ||||||| |||||||||||||||||||| || || ||||| |||
Sbjct 5369 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACGCA 5310
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 5309 ACCACTCTTTCACC 5296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 679319144668800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |