Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq139421 104 2e-17 seq236318 100 2e-16 seq15708 98.7 8e-16 >seq139421 Length=9021 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || || || || ||| | || ||||||||| ||| ||||||||||| || Sbjct 4694 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAATGGTGAACTCTCT 4635 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| |||||||| | || || ||||||||||| || || || || |||||||| ||| Sbjct 4634 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAGT 4575 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || | || || || |||||||| || ||||| Sbjct 4574 TACTCACTTCTTACTACAATGATTGCCCATGTTAC 4540 >seq236318 Length=20466 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||| | ||| | |||||||||| ||||| ||||| || || |||||||| || ||| Sbjct 4300 CAAGAAATACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGATTGCCATGGAGAAT 4359 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||| ||| | || || ||||| ||||| || ||| Sbjct 4360 ATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGGAT 4407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 6115 GGTGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 6174 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||| | |||||||||||| | |||||||| | || ||||| |||||| | Sbjct 6175 TCAATATTTTGGCTGAAGAAACGAGGTCTAATGCCTGGACTTACTTTTTCTAATGAGCTG 6234 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 6235 ATTAGTAGAGATGA 6248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| |||| Sbjct 801 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCA 860 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||| ||||| || Sbjct 861 TCCTTCTGGACAGCTGAAGAGGT 883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || |||||||||| || || || ||||||||| Sbjct 7616 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAGACTAATTTCTTTGAAAAA 7675 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGTGACAATAA---ATTTACT 44611 || || ||||||||||| | ||||| || ||| || || |||| ||| ||| Sbjct 7676 CGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCAAGTCCTGCAGATAACTCATTCACT 7735 Query 44612 ACGGATGAAGATTTCTAA 44629 ||||| |||||||||| Sbjct 7736 TTGGATGCAGATTTCTAA 7753 >seq15708 Length=5494 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| || ||||| | ||||||||| Sbjct 2679 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTCCAAATATCAATAGAAAAT 2738 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||||| || ||||||||| | | ||||| || ||||||||||| Sbjct 2739 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACATCAAAGA 2785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || |||||||| | ||| |||||||| |||||||| || | ||||| Sbjct 5296 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTCGAAGGCATCTTCTTTTCTGGTGCTTTTGCA 5355 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| || ||||| || | || || || || || | Sbjct 5356 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAACGAACTT 5415 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 5416 ATTAGCAGAGATGAAG 5431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393174295939600