Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq281538 86.0 7e-12
seq97569 86.0 7e-12
seq15708 84.2 2e-11
seq436509 82.4 8e-11
>seq281538
Length=3442
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| || |||||||||| ||||||||||||||||||||| ||| | ||||| || ||
Sbjct 2626 GTAAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 2685
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| || | | | | || || || |||||||| ||||||||||| |||
Sbjct 2686 CCAATAGGCTGCAGCAAGCTGACATTATTACTTCCAACAAAGTTCTGAGCCAAGTTCACA 2745
Query 117425 ATCGT 117429
|| ||
Sbjct 2746 ATAGT 2750
>seq97569
Length=10469
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| ||||| |||| | ||| || || || || ||||| ||||| |||||||||||
Sbjct 1571 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTTCCACCATGCAGCCTAGTTCCAAACTGA 1512
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | |
Sbjct 1511 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 1452
Query 152149 ATCGT 152153
|| ||
Sbjct 1451 ATAGT 1447
>seq15708
Length=5494
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | ||| || || || | |||||| ||||| | || | |||||
Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
| | |||||| ||||| || | |||| |||||||||||||||||| ||||| |
Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312
Query 74890 CGAC 74893
| ||
Sbjct 5311 CAAC 5308
>seq436509
Length=1438
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| ||||||||||||||||||||| ||| | ||||| || ||
Sbjct 688 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 629
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | | | | || || || ||||| || |||||||| ||||||
Sbjct 628 CCAATAGGCTGTAGCAAGCTGACATTATTACTTCCAACAAAATTCTGAGCCAAATTGACA 569
Query 117425 ATCGT 117429
|| ||
Sbjct 568 ATTGT 564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541169810416000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |