Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq281538 86.0 7e-12 seq97569 86.0 7e-12 seq15708 84.2 2e-11 seq436509 82.4 8e-11 >seq281538 Length=3442 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 2626 GTAAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 2685 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || | | | | || || || |||||||| ||||||||||| ||| Sbjct 2686 CCAATAGGCTGCAGCAAGCTGACATTATTACTTCCAACAAAGTTCTGAGCCAAGTTCACA 2745 Query 117425 ATCGT 117429 || || Sbjct 2746 ATAGT 2750 >seq97569 Length=10469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || || || || ||||| ||||| ||||||||||| Sbjct 1571 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTTCCACCATGCAGCCTAGTTCCAAACTGA 1512 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 1511 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 1452 Query 152149 ATCGT 152153 || || Sbjct 1451 ATAGT 1447 >seq15708 Length=5494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | ||| || || || | |||||| ||||| | || | ||||| Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | |||||| ||||| || | |||| |||||||||||||||||| ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 74890 CGAC 74893 | || Sbjct 5311 CAAC 5308 >seq436509 Length=1438 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 688 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 629 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | || || || ||||| || |||||||| |||||| Sbjct 628 CCAATAGGCTGTAGCAAGCTGACATTATTACTTCCAACAAAATTCTGAGCCAAATTGACA 569 Query 117425 ATCGT 117429 || || Sbjct 568 ATTGT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541169810416000