Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24600 179 4e-40 seq311453 168 8e-37 seq433667 118 1e-21 seq26672 95.1 1e-14 seq864359 87.8 2e-12 seq436509 84.2 2e-11 seq281538 84.2 2e-11 seq99924 84.2 2e-11 >seq24600 Length=2898 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| ||||| || ||||| ||| || || Sbjct 665 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCAAGT 606 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || |||||||| || ||| Sbjct 605 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || |||||| | || |||| || ||||| | ||||| || Sbjct 545 CAGAGGTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| Sbjct 485 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 439 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| ||||| || ||||| ||| || || Sbjct 437 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTGGAGGTGGAGCCAAGT 378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || |||||||| || ||| Sbjct 377 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 318 Query 27526 CAG 27528 ||| Sbjct 317 CAG 315 >seq311453 Length=2514 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | ||||| || || || || || ||||| ||| | | Sbjct 619 AATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAG 560 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || || |||||||| || || ||||| ||||| Sbjct 559 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCA 500 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| |||||| | || |||| || || || ||||||| || Sbjct 499 GCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTACAA 440 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| || ||||| ||| ||||||| | ||||| Sbjct 439 CATCCAAAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 392 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || || || || || || || ||||| || | || Sbjct 390 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGT 331 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || |||||||| || || |||||||| |||||| Sbjct 330 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 271 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || || | || ||||| | ||||| || Sbjct 270 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAAC 211 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | ||||| | ||||| Sbjct 210 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGTCTGAGGGGTGG 164 Score = 134 bits (148), Expect = 2e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| || || || || |||||||| ||| | || Sbjct 162 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAAACCATAACACTTGAGGTGGAGCCCAGT 103 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 102 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 43 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || || |||||||| || || || || |||| Sbjct 42 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATG 6 >seq433667 Length=2244 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||||||||| || |||||||| || |||||| | || || Sbjct 11 AATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATC 70 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| || || || || |||| |||||||| | ||||| || |||| ||||| Sbjct 71 TTTGCTGGCAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATCCAGAAGGAG 130 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || ||| ||||||| | ||||| Sbjct 131 TCCACCCTCCACCTGGTCCTGCGTCTGAGGGGTGG 165 >seq26672 Length=7677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || |||||||| || || || |||||||| ||| || | Sbjct 2071 AATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 2130 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| | ||||| ||||||||||||||||| || Sbjct 2131 TGACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 2175 >seq864359 Length=989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| ||| Sbjct 666 GGAATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGGCGT 607 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 || || | || ||||| ||||||||| || Sbjct 606 ACTCTGTCTGATTATAACATCCAAAAGGTAT 576 >seq436509 Length=1438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || |||||||| | |||||||| ||||| || ||||| | | ||| || |||| Sbjct 564 ACAATTGTCAATTTGGCTCAGAATTTTGTTGGAAGTAATAATGTCAGCTTGCTACAGCCT 623 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||||||||||||||||| || | ||||||||| Sbjct 624 ATTGGTCAGTTTGGTACTAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 683 Query 32245 TTCACC 32250 |||||| Sbjct 684 TTCACC 689 >seq281538 Length=3442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | |||||||||||||| || ||||| | | ||| || |||| Sbjct 2750 ACTATTGTGAACTTGGCTCAGAACTTTGTTGGAAGTAATAATGTCAGCTTGCTGCAGCCT 2691 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||||||||||||||||| || | ||||||||| Sbjct 2690 ATTGGTCAGTTTGGTACTAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 2631 Query 32245 TTCACC 32250 || ||| Sbjct 2630 TTTACC 2625 >seq99924 Length=25621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| ||| ||||||| ||||| ||||||||||| || |||||| | ||||| ||| | Sbjct 22981 CATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTGCTGACCAACAGAG 23040 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 || || |||||||| ||||| || | |||| | || || | ||||| || |||| Sbjct 23041 GCTGATCTTTGCTGGAAAGCAGCTGGCAGATGGCTGCACACTTTCTGACTACAACATCCA 23100 Query 27591 AAAGGA 27596 || || Sbjct 23101 GAAAGA 23106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564009040390400