Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq121033 136 5e-27 >seq121033 Length=27437 Score = 136 bits (150), Expect = 5e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| |||| || |||| || | || || ||||| || || ||||| || || || Sbjct 12628 ATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGGATTGAGTATCTGGACACAATA 12687 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| | |||||||||||||| ||| |||| ||| | || || || |||||||| Sbjct 12688 TTCTTCATCCTAAGAAAGAAATTTAATCAAATTAGTTTTCTTCATGTCTATCACCATTTC 12747 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || |||||||||||| | ||| | || || |||||| ||||||||||||| Sbjct 12748 ACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 12797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596516255340800